MmuALTD0016038-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000062012 | Zfp13
Description
zinc finger protein 13 [Source:MGI Symbol;Acc:MGI:99159]
Coordinates
chr17:23717738-23718192:-
Coord C1 exon
chr17:23718045-23718192
Coord A exon
chr17:23718024-23718044
Coord C2 exon
chr17:23717738-23717829
Length
21 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
AGGACCCTGTCTTCCTACAGTTG
3' ss Score
8.12
Exon sequences
Seq C1 exon
GAGGAGACAGTGCCCTTGGGAACCTCTCAGGAGTCAACACACATCAAGGCAGAGCCAGAAGAGCCACACAGTGAGGGGGCATCACGGGAGGACAGGACTCCAGGAACACAGCGCTGGATGTCCCCGTGTCCTGGCCCTAAGGACAAAG
Seq A exon
GTCCGTTCCTGCCTGGTGGAG
Seq C2 exon
TTGTTCCTTCTCCCTGGACTCCTGTACTGTCCCGAGGGGGACGGACCAGAGAGCGAAAGATGGCTGCTGCACTCCTTACTGCCTGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062012-4-7,5-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.710
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGAGCCACACAGTGAGG
R:
GGAGTCCAGGGAGAAGGAACA
Band lengths:
115-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: