MmuALTD0016038-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000062012 | Zfp13
Description
zinc finger protein 13 [Source:MGI Symbol;Acc:MGI:99159]
Coordinates
chr17:23580771-23581270:-
Coord C1 exon
chr17:23581078-23581270
Coord A exon
chr17:23581057-23581077
Coord C2 exon
chr17:23580771-23580862
Length
21 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
AGGACCCTGTCTTCCTACAGTTG
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTCCCAGGTAATGTGCAACACTGTGGAGACATGCTCTCTGGACAGGAGGAGACAGTGCCCTTGGGAACCTCTCAGGAGTCAACACACATCAAGGCAGAGCCAGAAGAGCCACACAGTGAGGGGGCATCACGGGAGGACAGGACTCCAGGAACACAGCGCTGGATGTCCCCGTGTCCTGGCCCTAAGGACAAAG
Seq A exon
GTCCGTTCCTGCCTGGTGGAG
Seq C2 exon
TTGTTCCTTCTCCCTGGACTCCTGTACTGTCCCGAGGGGGACGGACCAGAGAGCGAAAGATGGCTGCTGCACTCCTTACTGCCTGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062012-7-9,8-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.710
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGAGCCACACAGTGAGG
R:
GGAGTCCAGGGAGAAGGAACA
Band lengths:
115-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types