BtaINT0165106 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013592 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:HGNC:13041]
Coordinates
chr28:13225417-13225693:+
Coord C1 exon
chr28:13225417-13225562
Coord A exon
chr28:13225563-13225651
Coord C2 exon
chr28:13225652-13225693
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTTCCTTCTTTCTCCCTCAGCTC
3' ss Score
11.07
Exon sequences
Seq C1 exon
GGATCGAACCCAGGTCTCCAGCATTCTTTATGGACTGAGCCACCAGGGAAACCCGGTAATAAATCAGTAAGAAGCAAAAGTTTACATTCACTCGGTGAAAAGTATCAGGTCTAAGGTCAACATAAATGGGAGCCACACATGAGCAG
Seq A exon
GTAAGTGTCTTGTGTGTGGAGCTGTGTAGGCTGGTGAATCCAGAAACTACAGGACAAGCCAAGTTCTTACTTCCTTCTTTCTCCCTCAG
Seq C2 exon
CTCTCCCTCCTCCACTAAGAGTGAAAAATGAACAAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013592:ENSBTAT00000025240:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCGAACCCAGGTCTCCAG
R:
CACTCTTAGTGGAGGAGGGAGA
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]