MmuINT0178802 @ mm10
Intron Retention
Gene
ENSMUSG00000030145 | Zfp248
Description
zinc finger protein 248 [Source:MGI Symbol;Acc:MGI:1919970]
Coordinates
chr6:118453846-118454911:-
Coord C1 exon
chr6:118454677-118454911
Coord A exon
chr6:118453888-118454676
Coord C2 exon
chr6:118453846-118453887
Length
789 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CATTCTTCCTTCTCCCTCAGCTT
3' ss Score
9.4
Exon sequences
Seq C1 exon
CTACTACTAGGGAGCCCACCCTCGCAGGGGGCCTTTGGACTGGTCCCTAGGGCGCAGTGTTTGGAGTGGAAGAGGAAAGTGGTTAGCTAGCCACCAAACCTCCTGCCCCCTCACACACCCGGGATCCCAGTTCTGAATTTGGTTCTCGCTCATGTGTTTTGTGAAAATGACAGTGTCCTGAAACCATGGAAGACTGTGTGCTCGCCGAAAGTCTGGGACAAGTTTAAGGAGAGAG
Seq A exon
GTGAGCTGGAGTTGAGAGAGATGGGTGCATACAGGCTGCACATGGAATGCTAGTTCTTGGAAAACGATTGGGAGTGAAAGGCTCACAGGTCCGGAATTGCTATCACTGCCCCTACCTCCACATCTTATGCATCCCTCCTACCTGGTTAACTGTGGAGAGGCGGTCCCTTAGACTCTTGACTCATGTGAAGGTGGCATGTAGGGACACGCTTGCTATTATGGCCATATGTTTCCATCGGACAGTAGTGTAGGTGGGTCCTGAGAATCTCAACATCTTGCAGGTTTTTAGTGACACAACCGGGGCCTGCAGATGGCTGTATATTTTGTCTCTTTGAGGTGCAAGTTTCTTATCAAGCGATCGTTTTGAGAATTGTAAGCAAGCAACTTGGAATGTAAGCAAATACATTTTGAAATTTTTATCTTGCCTTAAAAGCCCCGTTCATTTCCTTGACTTACCTGACTTCAAGGGATTAATGGTGTTAGATTTAACAAAACCTCCTGATTCCCACCGCTGTCTCCGCACTCCCTCATTTTCCTTGATCATCAGTCCGGACAAGCCCATAGCCTTTCCTCCTTTAGATTATCATTTGCTGAATTAAAAAGATTGTCTCATGTTTTTAATTCTCCTGTAAGTTGGGTGCTAAGGGAAAACAAGCGTTTGCATTCATTCAGTGCAAAGGATCTAAACTCAACTTATGTTAGAGCCACACCTGAAGAAGTAACACCTTGCTTGTGGCTGCATGCAGGGCAGGCCAAGTCTCTGCTGACATCATTCTTCCTTCTCCCTCAG
Seq C2 exon
CTTTCCCTCCTCCACTCAGAGCAGAAAATGAACAAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030145:ENSMUST00000069292:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTACTAGGGAGCCCACC
R:
TTGTTCATTTTCTGCTCTGAGTGGA
Band lengths:
270-1059
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types