BtaINT0165135 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040336 | ZNF268
Description
Bos taurus zinc finger protein 268 (ZNF268), mRNA. [Source:RefSeq mRNA;Acc:NM_001083646]
Coordinates
chr17:45217333-45218103:+
Coord C1 exon
chr17:45217333-45217459
Coord A exon
chr17:45217460-45217753
Coord C2 exon
chr17:45217754-45218103
Length
294 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
CTATAATTTTCCATTCACAGGAT
3' ss Score
8.73
Exon sequences
Seq C1 exon
GGACCATTGTCATTCATGGATGTGTTTGTGGACTTTACCTGGGAAGAGTGGCAGCTGCTGGACTCAGCTCAGAAGCACCTGTACAGGAGTGTGATGTTGGAGAACTTTAGAAACCTGGTGTCCCTGG
Seq A exon
GTATGTACTGCCCCCTTGAAAGGAGTGTGTGTAATCTGTAGGCTTCCTCTTCTTGGTGGCTGAAAACTGGGGCATTTTTGTAAAATACTGGGTGATTTGGGGCTTATACTTAGAGGCCAAGTTTTCTTATTCTTCCTTTGGCATCAGAATATGCTGGTTGAATGGTGTTTACTTTGTTAGAGTGCAAAAGGGCAGCTTCATCATGTCACCTCTAAACTAAATTTTCCCAATTTTTCTGAATCCCTGGGTCCTAGGCATTCTTGATCTAGATTGTCTATAATTTTCCATTCACAG
Seq C2 exon
GATATCAATACACCAAACCCAGTATCATTTTCCAGTTGGAACAAGAAGAGCTGTGGATGATGCACAGCCCAAGTCAGGGCCATTCAGGTGAGTAACCAGAACATTTAGATCTTTTCCTCCTTACTCAGAATCAGTGTGAGGTCTGACATTTTGTTCTCTTTGTGTTTGTACTTTTATGTTATTTGTAGCCATCTTTTGCTCATTATTTCTTCTCTGGTATTCTCAGCTTCCTTCTTTTTTTTTCTGAGGTAGTAGACTCATTTCATTATGCATTTAAGCAGCTTTATCTCTTTATCTCACCTCATGTGACTTTCACACCCTTTCTAAATAAAGTTAATCTTCCTAATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040336:ENSBTAT00000056095:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.226
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCTGGGAAGAGTGGCAGC
R:
AATGAGCAAAAGATGGCTACAAA
Band lengths:
297-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development