HsaINT0186651 @ hg38
Intron Retention
Gene
ENSG00000090612 | ZNF268
Description
zinc finger protein 268 [Source:HGNC Symbol;Acc:HGNC:13061]
Coordinates
chr12:133191489-133192003:+
Coord C1 exon
chr12:133191489-133191615
Coord A exon
chr12:133191616-133191907
Coord C2 exon
chr12:133191908-133192003
Length
292 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TGTGATTTTTCTATTTATAGGGT
3' ss Score
9.31
Exon sequences
Seq C1 exon
GGACCTTTGTCATTCATGGATGTGTTTGTGGATTTTACCTGGGAGGAGTGGCAGCTGCTAGACCCAGCACAGAAGTGCCTGTACAGGAGTGTGATGTTGGAGAACTATAGCAACCTGGTGTCCCTAG
Seq A exon
GTAAGTGCTGCCTCCCTGAGGAGGAGTGTGCTCGATCTCCAGGCTTCTTCTTGGTTGCTGAAAACTGGAGGGCTTCTATGAAATACTTAGTGATTTTGGACTTAGATTTTAAGGCCAGATTTTCTTAGTTCCCTATTGGCAGCAGAGTATGCCAGTTGAATGGTCTTTACTTTGCCAAATTGCAAAAAGGCAGCTTCATCATGCTACCTCCAAACCAAATCTTTCCCGTTCTTCAGAATCTCTGAATCTCAAGCTGTTTGTTCCAGGTTGTCTGTGATTTTTCTATTTATAG
Seq C2 exon
GGTACCAACACACCAAACCTGATATCATCTTCAAGTTGGAACAAGGAGAAGAGCTGTGTATGGTGCAGGCCCAAGTTCCAAATCAGACCTGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090612:ENST00000536435:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTTTGTCATTCATGGATGTG
R:
TGGACAGGTCTGATTTGGAACT
Band lengths:
222-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains