MmuINT0003963 @ mm10
Intron Retention
Gene
ENSMUSG00000032425 | Zfp949
Description
zinc finger protein 949 [Source:MGI Symbol;Acc:MGI:1918890]
Coordinates
chr9:88567159-88567600:+
Coord C1 exon
chr9:88567159-88567285
Coord A exon
chr9:88567286-88567507
Coord C2 exon
chr9:88567508-88567600
Length
222 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
ATATTATTTTCTATTAACAGGGC
3' ss Score
9.5
Exon sequences
Seq C1 exon
GAGTTGGTGTCTTTTGAGGACGTCACTGTGAAGTTCACCTGGGAGGAGTGGCAGAATCTCAACGACGCTCAGAAGATGCTGTACAGGAGTGTGATGCTGGAGACATATAATAGCCTGCTGTCACTGG
Seq A exon
GTCAGTATCAGGAGCAAGCACCAACCCTGCAGGAAATATATGGGCCCTTGTAAGGTTGAGAGCTAAGGTTTTAGGCCACGAATTGTATGACTGTTCACTGCTCTCTAGGGAAAGGTGCACATTTGCACTTTAGTTACATAGATCCTAAAACCTGGTTTTATCTTTCTCCAAAGAACATTTAAGCAAAATTTTTCCAAGTCCTATATTATTTTCTATTAACAG
Seq C2 exon
GGCAATGCATCCCTAAACCTGAGTTGATCTTTAAATTGGAACAGGGAGAGGAGCCATGGACAGCAGAAGAACCTGCAAACAAGACTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032425:ENSMUST00000162827:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.0)
A:
PF0135222=KRAB=WD(100=93.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGTGTCTTTTGAGGACGT
R:
CTGGCAGAGTCTTGTTTGCAG
Band lengths:
220-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types