HsaINT0188233 @ hg19
Intron Retention
Gene
ENSG00000227124 | ZNF717
Description
zinc finger protein 717 [Source:HGNC Symbol;Acc:29448]
Coordinates
chr3:75790427-75790887:-
Coord C1 exon
chr3:75790761-75790887
Coord A exon
chr3:75790520-75790760
Coord C2 exon
chr3:75790427-75790519
Length
241 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCATTGTTTCTCATTACCAGGGC
3' ss Score
9.27
Exon sequences
Seq C1 exon
GAGTTGGTGTCCTTTGAGGAGGTAGCTGTGCACTTCACCTGGGAGGAGTGGCAGGACCTGGATGATGCTCAGAGGACCCTGTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGGTATCATTGG
Seq A exon
GTGAGTGAAACTTGCCAGTAACTCCCAGGATTGTATTTTGTTGCTGGTAAATATAGGAACCCTTTTAAGGTATAATAATATTTACTTGTAAGCTTCCAGTTGATGAAAAATGTGTCACTACTCTAATGAAATGTTCAAATTGGCTCCTTCATTGCACAGTCCCTGAAGCCCAGCTGTCGTCATTCTGAAAAGGATTTGACTTAGTGGTTTGACAAAGTCTTCCATTGTTTCTCATTACCAG
Seq C2 exon
GGCATTACATTACCAAACCTGAGATGATCTTCAAGCTAGAGCAAGGAGCAGAGCCATGGATAGTAGAAGAAACCCCAAACCTGAGACTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227124-ZNF717:NM_001128223:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=74.5)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGTGTCCTTTGAGGA
R:
CTGAAAGTCTCAGGTTTGGGGT
Band lengths:
220-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)