MmuINT0179159 @ mm10
Intron Retention
Gene
ENSMUSG00000037001 | Zfp39
Description
zinc finger protein 39 [Source:MGI Symbol;Acc:MGI:99183]
Coordinates
chr11:58892962-58900691:-
Coord C1 exon
chr11:58900565-58900691
Coord A exon
chr11:58893055-58900564
Coord C2 exon
chr11:58892962-58893054
Length
7510 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ACATTATTTCCCATCAACAGGCC
3' ss Score
9.64
Exon sequences
Seq C1 exon
GGGTTGGTGTCATTTGAGGATGTGTCTGTGGACTTCACCTGGGATGAGTGGCAGGACCTGGATGACAGTCAGAGGAAGCTCTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGGAGTCCTTGG
Seq A exon
GTGAGTGAAGTCCCCAGCAGTATTACAAACACTTCCTTTGTTAGTAAGAACAGTAACCACATCTGAAGTTTGTTTAGCTACACATTGTGTGTGTGTGTGTGTATAAACCTACCTCCAGAAATTGGCAGGTCTATGCAGACATCTCACATCTTTATATTGCAAGCATTTAAATCCTCTATTAGCTATTTTGTGGCACGGGATCATTTTAAGCATGGTCATGCTTCTGTGCTGTAGAAAACTGAAAGTTACAGGGCTATCCAGCTGCACCCCTGCGTGCATCAACCGTCTTCTCTCTGTCCCTCCCTCACACACTCTCATCGGCATTGTCACCCGCTCTTGCTTCTATTTCTGTGAGTGCCAGTTTGTCTTCCACATATAAACAAGGATGTGCAATGTTTGTCCTTCCATGCCTGACTTAGTTAACTTAGCAAAAACGTCCTTCAGTTCCAACCCGAGATAAGTTTGGGCTTGTTAGTAAATAATATTCCCTTATACATTTTTTTAACAAAAAGATTTATTTATTTATATATTTTATGTATATGGGTACTTTGTCTGCATATATAACAGAAGATAGCACCAGACTGTTGGGAGTTGCCACGTGTTTGCTGGGAATTGAACTCAGGTCCTTTGGAAGAGCAATGAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCATAAATAAATATATATATATTAAATATATATATATTTAAAAAGACAAGAGCTCATATAGCTCAATATTACCTTGAACTCATGACCTTTCAAACTACTGATTTCATTTTCTTTTAATATATTCAGTGATAGCCGAACCATAAAGGTGGTTCTATTTCTAGTTTTTAAAGGAACTTTTATACAGTTTTTCATGGTAGTGATTTTATATTTCCAGCAACAGTGAAGGATAATGTGTCTTTCTTTGTGTCCTCATTAGTGCTTGTTGCTCATGGTTTCTGGAATATTCCAGCTGCAAGTATAGTTACGCTTGGCTGTGGTTCTCATTCGCATTTTCTGACGTTTACAGTACTGACCACTTATTGGTGGGTTTCTGTGTTATCTGTATGCCTTTGGGAAAATACCTACTCAAGTCGTTTGCTCAACTTTATAGGACCTGTTTTTGTTTTTGTTTTTTTTTCCTGCTCTTAACTTCCTTATGTAGTCCAGGATTCAGCCCCTTGTATAGTTGCAGACCTTTTCATTGGCTCTGTAGGTTGACCTTCACTCTAGCCGTGGCTTTTCTTTATGGAGGGTTTTGTTTTTGAAACCCCAGTTGTCAGTTTTTGTGGTAGATGGCTGTGATTTGAGGTCCTGTCATCTTTGTCCTGGGTCTGATGGTGTTGGTCTGTGCTTCCAGCACCCTGGAGATCGAGGAGGAGGTATTACTTGTGCCCAGGACTTCCAGAGCCACCTGGCAACATAGAGACGCCAATCTCAAAAAGGGAAACAAATCTTTGAATCAATATTCAGCTTCCCTGTGTTTTCCTTCAGTAGCTTCAGATCTTGCATTTACATCTTTGATATATTTTAATTAGATTTCTGAATACGGGAAGACATAGGGGGTCTAATGTCTTTCTGCACACCAGAGAGCACAGCGCTTGTACCAGTTACTGAGGAGAGCTTCCTTTTTAACCGATCCTGCTGCCTCTGGTGAAAACCGGGTGGCCGTGAGGTCTGGATTTGTTCCTGTTGTTTCATTGGCTGTTTGTCTACGTTTATGCTAGTTCTGTGCTGTCCTACCATGTCCCTGTGTGCTGTTGCTCTGTCTTATGTCTTACTGTGTTCCTGTGTGCTGTTGCTCTGTCTTATGTCTTACTGTGTCCCTGTGTGCTGTTGCTCTGCCATATACAACAACTGATTTGCTTCGGTTTTCAAGGATGCTTTGACTGCCTGGGGGTCTTTTGTGTTTCTCTGTGAAGATTAGGATTGGCTTTTTTCTAGAACGATGAAAATGCTGTTGGTACTTAGATTCCATTGAATTGGTAAGTCAGTGTGAGTAGTGTGGACATTTCATCAATATTGAAGTTGTCCATTTAATAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTTTGTGTTGTAAAGATTTATTAATGGAGAATAGGCAGAAGAGATGTAGTACTTCTTGATGCCAGTGTGTTGGTCGGCTCCAGCTTCCTTTTGGCCCTGGTATGTATCCTCACACCCTTCTGGATGAACTTGAGTGTCCTTGGAGTGACTGCAGATCTGATGGGGTGCCACTCGTAGGGCAGAAATTGCATATTCCCACAAAAATGTGGTGTTCCTCTTGAGACGTTAGCACCATCAGCCATGACAGACATTGGCATTGTCAGCAGTGACTCCGCTTGTTCATATTCTTTCTCACTTTGTGGCCAACAGCTACGGCATAGCCTGGAGCCATGGCTGCTGCTCTGCAGTGGTGGCTACAATGGGACCCTCTTCATTTGAGTTAATTTTATATTCAGCTACTTCATTGAAGCTGTTTATCAGGCTTAGGAGTTCTCTGGTGGAATTTTTAGGGTCACTTATATATACTATCATATCATCTGCAAAAAGTTATATTTTGACTTCTTCCTTTCCAGTTTGTATCCCCTTGATCTCCTTTTGTTGTCGAATTGCTCTGGCTAGGACTTCAAGTACAATGTTGAATAGGTAGGAAGTTATTTTTAAATTTGCATTTTACTTTCTTTCATACTCATTAGTCATCTGGTAGGATAAAATTTCCAGTTTTATATGTCTATCTATCTCATTGTGATCAGAGAGGACATTCAGGGGTTTTGTTTGTTTATTTTTAAATTTGCCGAGACTTCCTTCGTTTCCTATGTTGTCCTCAGCAGTAATATGCACTCCTTGAGATAATGGTGCTCTCAGCAGGAGCTGGCAGCCTGTCAGTGTCTCTTAGGCTATTTTGTTCCACTGTGGGCTTTGATTCCAGCGCTTCTCTGTAAATTTCCTGTCAAAATGACCTGCCCTTTTGGTAGGTGATGGTAGCTGTTGTAGTTCTCAGATATTGTACTGTATATAGTCTACCTTTTCTGTATGACCTAATGACATGCGCTCTACAAACTCAGCGTTCAGCACGTGTGCATCTCTTTACACATTACTTACTCTTTGAATTGATCCCTTCTCCTCCTCTTCCTCTTCATCCCCCTCTTCCTCTTCCCACTCTTCCATCTCCTTTCACAGGTTTTCATTCTGTTTGAACTGGTTGCTTTGGGTCGCACTTGCATGCTAGGGCCATCCCTTTGGATTCGGTTCACATGTAGTATTTCTTAGTAAGTGGTTTCTGCAGCATGCCACTGAAATTGTTATTTTCATCTATTCAAACGGTTTACATATTTACTGGGAAATAGTTTTGTTTATATTTAAGAGTATTTTTGATAACTAAGGACATATTTCTGACATTTTTGGGTGGCTATATTCTGCATTCTTTTTTCCTCTGTGTTAATTTTTTGCTTAATGGTTTTCTGTATTGATATACTTTCTTCTGTGTATCTTGCTGTATTGTTTAATTTTATATGTTTCAGTAATGGTGGACATGATCTGTTCACTTACTATGTAGCATCTCTTAAGCCTGTGTAGTAGGTAAGGTTCTTTAGAGCAGTGGTTCTCAACTTGTGGGTCACAACCACTTTGGGGGCCAAGTGACTTCTTTACAGGGGTCACCTAAGACCATTGGAAAACACAGATATTTACATTATAATTCCTAAAAGTAGCAAAATTACAGTTATGAAGTAGCAACAAGAATAAAGGGTTGAAACATTAGGAAGGTTGAAAACCATTGCACTAGAGAAACAGATCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGTGCATGTATGTATATGTATTAAAAGAGAGTTATTAGAATATCTTACAGCTGATAGGGAAGGGTAGTCAGACAATGACTATCTACATCCTGGAGAGCTTGAGAACCCAGTCCTTGTCAGGCCACCAGGCCAGATACCTCAACTGTCTCAGTCTAGTGTTTAAGGCCTGAAAGGATCCTGGAGAGTCACTGGCTTTCAATCCATTGTGGAAACTGAAGAAGCTAGGGTCTCATATCAGGAGAGAGTGCCACTGGCAGCAGAGATGAGCACACTCCCCAGCAGGGAGAGCAGGCAGGCAAGCAAACAGCACTGCTTTCCCCTCGGGCCTCCTGTATCTGCGCCTCCGACAGAAGGCGCTGGTTCCTTCTTTCCTCAGCTAAGCCTTCCTGGGAGGACCCAGGCGGATCCCTTCAGAGGCTTGCCCCTCAGTGATTCCAGACCCCATTAGGCTGGCAGGATTCATCCCCACAGGCTGATCTAGTGCTGATGAATCTCTGTAGTTTTGTTTTAGCAAGTCTAGTTCTCAGTCTTTGAAAGTTAACCTCTCTTGGTACAGTGTTCTCGGTTGGCAGTGGCTTCGTTTGTTTGTTTGCTTTAACTTTGTCAGCCAGCCTCTTATGCCCTCACCTGTTGGATTCCTCTTGCACTCTGGGGTTCCTCTAAAGTATGTTTTGCTTTCGACAGTCTTATTATCCATGAGATCCTTTTTGGGGGGCAAATCTAGATGTTCATATATTTGGGATCTAGATATTCATGTTTCCCTTGAATTTGGATTTTATTTGTCATTTATGTCACTGAATAATTTACTTATTTGGATTTTTGAAAATTTGGTGTGTGTATGTGTGTGGTGTATGTGCTTGTGTGCATGACGTGTGCAAGTTCATACACATGTCCATGAACATTTGGAGGCCAGAGGATAGGATGGTGTTAGGGGTATTTCTCTCCCCCTCCCTCTCTCCTTATTCCTTTGCATCTTAGTTCCAAAAGCAACTTGAGGAAAAAAATTTGGCTTACAGGTCACAGTTCATCACCAGGGAACTGAAGCAGAGGCCATAGAGGAGTACTGCTTCCTGGCTTGCTCGCCCAGGGCTCATTCAGCCTGCTTTCTTATACATCCCAGCACAGCCTGCCCAAGGGTGGCACAGCCCACAGTGCCTGGGCCTCCTCACATCAATAACTCTAACCAAGTACATTCCTGCAAGCTTGCCCACAGGTCAGTTTAATGGAGACATTCTTTCAGTTGGGTTCCTGTTCCCAGATAACTAGCTTTTGTCAAGTTGACAAAACCAAAAATCCCAAGCAGGGTCTCTCCCTGAACCTGAACTTTCCTGTTTAGGCTGGCTGGCAAACTCCTGGGATCCTCTTGTCTCTGCCTCCCAATGTTTGTTTTTTTTTGAAATAGGGTTTTCCCATGTAGTTCCAGTTCACTTGGAATTTGCAGTGTAGTCCAGGCTGGCCTCCAACTCCTGAGTTTCTTGTTTGAGCCGCCTGAGTGCTGAGAATTACAGGGGTAGTTCACCGTGCCTGGATGAATGTTTTGTTCTGGATTGGTTTTTATGTTCAATCTGTATTCTTTTTGGAACACCAGTCACACAAATGCTTAAAGCAAAAGTCTTAAAATTCCTCATTAAAAGTGTTTTTTTTTTTTTTTTTTTTTGTGGAGTGCTAGAGAGATGGCTTAGCAGTTAAGAGCACCCGCTGCTCTCCCAGAGGACCTAGGTTTGAGTACACACATGGTAACTCACCAACCATTTGTAACGTGGTGCATTGTTGAGGCCGGCTAGCGGCTCACTTGTCCGGGTTCGAGCCTGGAAGGCATCTTGGAATCTGGAAGAAAAGAGGGAATCTAGGCGGCGTGAGAAAGGATGGAGGTAAGACAAAATTCTGATCAAAGCTCAACTTTAATGTTGGCAAACACGCTTTATAAAGAAGAGGGGAGGCCCATTCCCAGCCACGCAAAGTTCCTTTGAAGTAGACAGATCAGCCTTTTAGTAGGAACTCAAGATCAGTTTGGTGTTAACTCCCGAAGAACTTGGCGAGCTGGTTCAGCCTCAGGCAGGTAGTGGCACATCAAAGGAGAGGAATGAGAAGCAGCCCAGCAGGTGGCTCCGCCTCAGTGGCAGATGGTCTGAGGCCAGCCTAGCTAGGCTGGAAGGAGGTAACAGTGCATAGACATACATGCTGGTAAAACATTCATATAGATAAAATAAAAATAAATAAAATTAATTTCTTTTTCCATTTAAAAATCTGACACGTCTTTAATCCTAGCACTTAGGAGGCAAAGGGAAGTGGGTCTGTGAGTTCGAGGCCAGCCTGGTCTACATAGTGAACTCCAGGACAGCCCGGGCTACGCTACATAGTGAGACTCTATGTCCAACAAACAAACAAACAAACAAACAAACAAAAAACTCAAACCAACCAACCAAACAAAAAACAAAAGTATCTAAATAACTTAAGTAGTACAAGCTCTGACATTATTCTAAATGTTATTCTGGCTGATTAGTTCTGCTGTTGAGACATCCACCTTTTTGTTCCCTTAGTTTTTGTTGAGTTTCAACAAATGCTCAGACTGCTTGAACATTTTTTAGAACTGTATACTGTGTTTATTTGTGAGTGTGTGTGTGTGTGTGTGTGTGGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGGTGTGTGTGTGAGTGTGTGTAGTGTGTGTGTGAGTGTGTGTGGTGTGTGTGTGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCGCGTGCGCACGGTCACACGCTGTGGCGTACACCTAGGGGTCAGAGGGCTAGGGAGAACTCAGACGCCAGCCTCTGTATCTGGTGCATTTACCTCCTACTGAGCCATCTCAAAAGCTGGATCACTTCAGTTTTCAGTCACCTCTGTCTCCTACATACCTGAGTCAGTCAGTCAGTCTGTCTTCCTCCCTCCCTCCCTCCCTCTCTCTTTTTATTCTGTCTTTCTTTCTTATTGAATTGTGTTATGTCTTTAAGTTTTCTTAAAATCATTCTTAGATTTCTTTTTTTTTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGTTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAACCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCGGCATTCTTAGATTTCTAATTCCTACGCATTTACTCTTAGTGCTGGGGATTGATTGAAGACTTCGTGGATACTCGGCAAGTGCTCTGTCACTGAGCCGTATTCCCAGCACCCGTTTCATTTTGAGATAGGGTCTTACTAAGTTGCTTAGACAGATTTGGATCTGGTCTTCCTTCTGCCTTAGCATCTCAAGTAGCTGAGACCACGGGCCTGCAGGGGTCCCAGCTTTGCTCTCTTCTCAGGCCATTTCACTTTCCTGACTAAAGGCACGGTTCCAGTGCACGAGGGCTATAAACTTCTCACAGAATGTTCGGATGGGTCTAGCAGTCACTTGTTTCCCAAAGCTGTGATCTTTCTGCAGTGAACTTGACCTAGCATTTGATACAGCCTTACATTATTTCCCATCAACAG
Seq C2 exon
GCCACTGCATTACCAAACCTGAGGTGATCTTTAAGCTGGAGCAAGGAGCTGAGCCATGGAGAGCAGAAGACGTCCCAAAGCAGAGCCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037001:ENSMUST00000102703:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.281
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types