RnoINT0168759 @ rn6
Intron Retention
Gene
ENSRNOG00000043223 | Zfp949
Description
zinc finger protein 949 [Source:RGD Symbol;Acc:2302581]
Coordinates
chr8:96376784-96377229:+
Coord C1 exon
chr8:96376784-96376910
Coord A exon
chr8:96376911-96377136
Coord C2 exon
chr8:96377137-96377229
Length
226 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ATATTATTTCCTATTAACAGGGC
3' ss Score
9
Exon sequences
Seq C1 exon
GAGTTGGTGTCATTTGAGGATGTCACTGTGGATTTTACCTGGGAGGAGTGGCAGAATCTCAGTGATGCTCAGAGGATACTGTACAGGAATGTGATGCTGGAGACGTATAGCAGCCTCCTGTCACTGG
Seq A exon
GTGAGTAAGTCTCAGGAGCAAGCACCTTCCCTGCAATAAATATTTGAGCACTTGTGAGGTTTAGGGCAAAGGTTCTAGGCCACGGATTGTATGATTGTTTAATGCTTTCTCGTGAAAAGTCCACATTTGCACTTTTATTACAGAGATCCTAAACCTGGTTTTGTCTTTCTTCAAAGAACCTTATTAGTACAATTTTTTCAAGTCCTATATTATTTCCTATTAACAG
Seq C2 exon
GGCAATGTATCCCTAAACCTGAGTTGATCTTCAAGTTGGAACAGGGAGAGGAACCATGGGCAGCAGAAGAACCTGCAAACAAGACTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043223:ENSRNOT00000032976:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGTGTCATTTGAGGATGT
R:
CTGGCAGAGTCTTGTTTGCAG
Band lengths:
220-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]