BtaINT0165231 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007012 | ZNF3
Description
Bos taurus zinc finger protein 3 (ZNF3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046614]
Coordinates
chr25:36906707-36908954:+
Coord C1 exon
chr25:36906707-36906834
Coord A exon
chr25:36906835-36908817
Coord C2 exon
chr25:36908818-36908954
Length
1983 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTGAACTTTTGCTTCTGTAGTGC
3' ss Score
7.01
Exon sequences
Seq C1 exon
TCCTACAGCACTGATAGCAAATAAGTCTGAACTCCCAGGGATTTGAACAGAGGCTGCCAAGTTCACAATAATTGCTACTCTGGCCTTCTAGAGACTAACTCCAGAGAAGGAAGGAAAGAGTCCAGCAG
Seq A exon
GTAAAGCTTCCACGACTTCTCACTGCCCGGTCATCCTTCCCGGAACACTGCATCTAGGAGCACTGCAGGGGGTCGCATGGGCAGTGGAGCAGGGGAAGGGCCCTGCCTGGACCTGAAGCTCTACGGGCACAATGGGGGTTTTTCTTTCTGTGAGAAACATTGTTCAGTGATCCAGACACTGGGGACTTGTTCTCAACAGTATGCCTTTGAGCTCCAGCTTTGGTTAACCCAGCTGCGAGGAGGGAGTGCTACTTCTTTCTCTGGAGTCTGAGCCTCTGACTTTCCTTTCTAAGGAGAGTTTAGACTGAGAGCGGATTTATTGGGAGTGTCTGCTTATAACCAGTCCTGGAGATTGTCAAGTTGGGCAATAGGAAGAAGAAGATGGCTGACTCTGAGAAAAAGCTGAAGGGCCCCAGCTAGGAGGGTGATGATAGCAAGAGGGTGTGTCACCTTGATTGTCAGTGGGCCTGGCTCATGCCTGATTCCTTGCTTTTCACTATATAATGGCATTGTGATGGGCCTTCTACAGCCCCTTGCTGCCCAAAGACTAGAGTTCTCTGAACTCTGAGTGACTCTAGGGGGCCTTCTCTTTTTATATCTTAGGTGAATGCAACGGTCACTCTTGATTGTTTTACTCCTTTCAGGAGTACCCTGCAATGTAGTTGGCACTCAACAGATGTTTGTTATATGAGCAGATGAATAAAGAGAGGGAGGCGGACAAAATCCAGGGGTTTTCACCTAGGTTCTTGCCTAAGTGTCAGGCTGCTCTGAGGACTGCTGCACTCTTCTCAACCTGTTGATTCTTGAGGACAGACTTGTACTTGAGATTCAAATCTTAGTCTAGGTACTAACTTGACACTCACTGTTATTCACTGGAGCAACAGAGAACAGACCTCTTGATTGCCGTGGCAACCAGGGAGCAGGGACCTTAGTAGGGATAAAAATGGAGTAATAAATGATAGTAGGCTTTTTAAAAAGCATTGGTTCTTGCTTCAGGGACTTACATTCTGATCCAAGGAAATCTGTTATGAGAGAAAGGAGATAAAAAAGCAAGGTGGCTGCTTCTTCTTAGGGCGAGGAGACACAGCAACTGGGACTATTCTCCCAGAATCTGGCGAATATGTCCACCCACACCCTGTGATGAGACTATAGAAGGACCACAGAAAGGGCCCAAATCCGTCAATAACATCCCACCGTTGACTGAGACTGAGAACAGAAAACTGTCTCAGGGAGAAAGGGAGGAAGAATCTATCTTTTTTTCTGGCCATGCTGCATGGTTTACAGGATCTCTGTTCCCCGACCAGGAATTGAACCTGGGCCACGTCAGTGAAAGCACTGAATCCTAACCACTGGACCACCGGGAAATGCCCGAATTTATCTTAATAGATCTGCACTGTCTGTCCTAGTTCTGTGAGACAGGGTTTTTAAAATGAGACAGAGAACTTCTGGAGGTTCTGGAAGTATTCTGTACTATCTGTTATTTGGGGGCTGTTTCTTGGCCCCTTTTCCTCTAAAGAGAGCATCTACATTTACTATAACAGCTAGAAACATACCACAGTAAAAATTTTTTTTTTCTTTTTAGTAGAAGAAAAATGTTTATGAGGATTAAAAAAAAATCTGTATACGTTTGTTTGTCCATTATTCCAAGTATACTTAAAACTTGATACTTAGACATTTTGCCAGCTGTAACACTCTTTTTCACTGTTCTTCATTTGAGTAATTGCTTAGTATTTAACTTTGTTAATAGCATCATTTGGCACCTGTGTTCTCCATTTTTGTTGTTAGAACTACCACCCAGTGTGAATTGGGGAGCCTAAAGTGGGATGTTGTCCAGGAACTTGGGCGTTTGACCCAAAAGACTAGTCCCAGTTACTGCATTTCCTCTTGCTGTTTTGGTACTAACTGGAATGCTAGTTCCCTTCTTTCTGTATGCAGGAGGGTTTTTAAAAATTATCTTTGAACCTTGAACTTTTGCTTCTGTAG
Seq C2 exon
TGCTTCCACCTTCTCATACAAACCCTGCTTCCTGCTGACTCTGAAAATAGGAGACCAGAGATCCGAGCTTCTAGTACGACCCATGGAAACTCAGGCTGATCGAGTATCTCAGGAACCTCAGGCCTTGCTTGAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007012:ENSBTAT00000037194:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.842
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTACAGCACTGATAGCAAAT
R:
TCTCAAGCAAGGCCTGAGGTT
Band lengths:
262-2245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]