HsaINT0186798 @ hg38
Intron Retention
Gene
ENSG00000166526 | ZNF3
Description
zinc finger protein 3 [Source:HGNC Symbol;Acc:HGNC:13089]
Coordinates
chr7:100077303-100079656:-
Coord C1 exon
chr7:100079536-100079656
Coord A exon
chr7:100077434-100079535
Coord C2 exon
chr7:100077303-100077433
Length
2102 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTGAACTTTTGCTTCTGCAGTGC
3' ss Score
8.26
Exon sequences
Seq C1 exon
CATTGGCATCAACAAAAGTCAGAATTCCCGGGAACTTGAACAGAGGCTGCTAAATTCCCAGTAATTGCTCCTTTGGCCTTCTAGGGACTGACTTCAAAGAAGGAAGGAAAGAATCAGGCAG
Seq A exon
GTAAAGCTTTCCGTGTCTTGTTCTTACTGCCAGGCCATCTATCTCGGTCCCCACGGGCAGCACCAGGGAGTGAGGCTGGCAACAGAGCAGGGGAAGGGCCCTGTCTGGACCTGAAGCCATGGGGGCACAATGGAGAGTTTTCTTTCTGTGAGAAACGCTGTTTACTGATCTGGACACTGGGTGCTTGTTCTCAACAATATGCCTTTGAGTTCCAGCTTCACTTAACCCAGCTGTGAGAGGGAGCTGTTGCCTTTTTCTCTGGAGTCAGACCTTTGACCTGCCTTTCTAGGAGTTTGTACTGAAAGCTGACTTGTTGAGGGCGTCAGCTCATAAATAGCTCCGGAGATTGTAAAGGTGGTTGATAAGAGGATATGATGGTTGGCTCTGAGACACCATTGAAGGGACCCTGCTAGGAGGGCGATGGTGGCAAGAAGGTGTGTCACCTTGATTGCCAGTGGCCTGGCTTGTGCCTGAGTCAGTGCTTTCCACTGTGTAAGGGCTCTGGTATTGGACATTCTATATCCCCTGCTACCCGAAGACCAGAGTTGCCCAAACTTGCGACTGACTTTCAAACAGGACCCCTCTTCCTTTGTTCTTTTTTTTTCTTTTATTCTCTCAAACATTCTCTTATCCATTCCTCTTCCTTTGATGCCTTATGTGAGTGTAACAGTCTGTAATTATGAAGCACATACTTTTTGCATTCCCGATTTTTTTACTCCTTGCAGTTGTGAGTGGCAATAGAGTTAGCCCTCAGCAAACATTTGCTATGTGAGCAAATGAGTAAAGAGATAATGAGAGGTAGATCAAATCCAGGGTTGGTTGGTTTGTTTTGTTTTGTTTTGTTTTGTTTGAGACAGAGTCTCACTGTTGCCCAGGCTGGAGTACAATGGTGCGATCTTGGGTCACTGCCACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGCATGTAACACCATGCCCAGCTAATTTTTGTATTTTTTCTTTTCTTTTTCTTTTTTTTTTTTTTTGAGGCAGAGTCTCTGTCTATTGCCCAGACTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCACCTCCTGGGATCAAGTGATTCTCCTGCTTCAGCTTCCTGAGTAGCTGGGATTACAGGCACACACCACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCATCATCCTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATTTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCCAGCCTGGGAGTAGTCTTTTTATGCCAGTGAATGTATATACCCGCTCCTGCATTTTGTTATAAATATTACTCAAAGTGATGGGGGCAGCCAAAGGCGGGATATTGTTGAGGAACTTGGGCCCTTTTTGTGGTCCTTGTGATAGTCTCATTTCAGGGAGTATATTTACCAGGATCTAAAAGACTAGTCTGAGGCTGGGCATGGTGGCTCACACCTGTAATCCTAGCACTTGGGGAGGCTGGGGTGGGCGGATCACCTGAGATCAGGAGTTTGAGACCAGCCTGGCTGACATGGTGAAATCCCACCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGTGCGTGCCTGTAATCCCAGCTACTTGGGAGGCTAAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTGGCAGTGAGATGAGATTGCGCCATTGCACTCCAGCCTGGGTGACAAGAGTGAAATTCCGTCTTAAAAAAAATAAAGAAAATTTAAAAATACCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCAACAGGTGGGAGGATAGCTTGAGCCCAGGAGTTCCAGACCTGCCTGGGCAATATAGCGAGACCCTGTTCTCCACAAAAAGGAAAAAAAAAATTAAAAAATAAAAGAAAATAAAAGACTAGTCCCAGTTGCCACATTTCTTCTCACTGTTCCTGGGTACTCACTGAAATACTAGCTCCCATCTTTCTGTATTCAGGAGGTTTTTTTGAATTATCTTTGAACCTTGAACTTTTGCTTCTGCAG
Seq C2 exon
TGCTTCCTCATTCTCTTTTAAAACCCGCTTCCCGCTGAGTCTGCACCCAGGAGACCAGAGAGCACCTTGCCCTTCCATGGAAACTCAGGCTGATCTCGTATCTCAGGAACCTCAGGCCCTGCTTGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166526:ENST00000299667:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.379
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains