HsaEX0073378 @ hg38
Exon Skipping
Gene
ENSG00000166526 | ZNF3
Description
zinc finger protein 3 [Source:HGNC Symbol;Acc:HGNC:13089]
Coordinates
chr7:100077303-100081727:-
Coord C1 exon
chr7:100081635-100081727
Coord A exon
chr7:100079536-100079656
Coord C2 exon
chr7:100077303-100077433
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCCTTAATCACACAGCAT
3' ss Score
6.37
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CTTTGTTCTGTCCCCGGTGTGTGGGTCTGTGACAGGGTCCAACAGGGCCTGGTCCGTGTCCGGTCCCCCAAATCTGTCGTCCCTGCCCCCAGG
Seq A exon
CATTGGCATCAACAAAAGTCAGAATTCCCGGGAACTTGAACAGAGGCTGCTAAATTCCCAGTAATTGCTCCTTTGGCCTTCTAGGGACTGACTTCAAAGAAGGAAGGAAAGAATCAGGCAG
Seq C2 exon
TGCTTCCTCATTCTCTTTTAAAACCCGCTTCCCGCTGAGTCTGCACCCAGGAGACCAGAGAGCACCTTGCCCTTCCATGGAAACTCAGGCTGATCTCGTATCTCAGGAACCTCAGGCCCTGCTTGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166526-'2-20,'2-14,7-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.379
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTTCTGTCCCCGGTGTG
R:
TCAAGCAGGGCCTGAGGTTC
Band lengths:
219-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development