HsaEX0073378 @ hg19
Exon Skipping
Gene
ENSG00000166526 | ZNF3
Description
zinc finger protein 3 [Source:HGNC Symbol;Acc:13089]
Coordinates
chr7:99674926-99679350:-
Coord C1 exon
chr7:99679258-99679350
Coord A exon
chr7:99677163-99677279
Coord C2 exon
chr7:99674926-99675056
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCCTTAATCACACAGCAT
3' ss Score
6.37
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
Exon sequences
Seq C1 exon
CTTTGTTCTGTCCCCGGTGTGTGGGTCTGTGACAGGGTCCAACAGGGCCTGGTCCGTGTCCGGTCCCCCAAATCTGTCGTCCCTGCCCCCAGG
Seq A exon
CATTGGCATCAACAAAAGTCAGAATTCCCGGGAACTTGAACAGAGGCTGCTAAATTCCCAGTAATTGCTCCTTTGGCCTTCTAGGGACTGACTTCAAAGAAGGAAGGAAAGAATCAG
Seq C2 exon
TGCTTCCTCATTCTCTTTTAAAACCCGCTTCCCGCTGAGTCTGCACCCAGGAGACCAGAGAGCACCTTGCCCTTCCATGGAAACTCAGGCTGATCTCGTATCTCAGGAACCTCAGGCCCTGCTTGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166526-'3-17,'3-14,5-17
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.383
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTTCTGTCCCCGGTGTG
R:
TCAAGCAGGGCCTGAGGTTC
Band lengths:
219-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)