HsaEX0073379 @ hg19
Exon Skipping
Gene
ENSG00000166526 | ZNF3
Description
zinc finger protein 3 [Source:HGNC Symbol;Acc:13089]
Coordinates
chr7:99673165-99677279:-
Coord C1 exon
chr7:99677163-99677279
Coord A exon
chr7:99674926-99675056
Coord C2 exon
chr7:99673165-99673253
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTGAACTTTTGCTTCTGCAGTGC
3' ss Score
8.26
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
CATTGGCATCAACAAAAGTCAGAATTCCCGGGAACTTGAACAGAGGCTGCTAAATTCCCAGTAATTGCTCCTTTGGCCTTCTAGGGACTGACTTCAAAGAAGGAAGGAAAGAATCAG
Seq A exon
TGCTTCCTCATTCTCTTTTAAAACCCGCTTCCCGCTGAGTCTGCACCCAGGAGACCAGAGAGCACCTTGCCCTTCCATGGAAACTCAGGCTGATCTCGTATCTCAGGAACCTCAGGCCCTGCTTGACAGTG
Seq C2 exon
CTCTTCCTTCAAAAGTTCCTGCCTTTTCCGACAAGGACAGCCTGGGGGATGAGATGTTGGCGGCTGCGCTCCTAAAGGCCAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166526-'5-19,'5-17,7-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.383 C2=0.024
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCAACAAAAGTCAGAATTCCC
R:
CTGGGACTTGGCCTTTAGGAG
Band lengths:
202-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)