HsaALTD0007415-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000166526 | ZNF3
Description
zinc finger protein 3 [Source:HGNC Symbol;Acc:13089]
Coordinates
chr7:99673165-99675056:-
Coord C1 exon
chr7:99674926-99675056
Coord A exon
NA
Coord C2 exon
chr7:99673165-99673253
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
GCCCTTTTATTGCCCTTCAGCTC
3' ss Score
8.84
Exon sequences
Seq C1 exon
TGCTTCCTCATTCTCTTTTAAAACCCGCTTCCCGCTGAGTCTGCACCCAGGAGACCAGAGAGCACCTTGCCCTTCCATGGAAACTCAGGCTGATCTCGTATCTCAGGAACCTCAGGCCCTGCTTGACAGTG
Seq A exon
NA
Seq C2 exon
CTCTTCCTTCAAAAGTTCCTGCCTTTTCCGACAAGGACAGCCTGGGGGATGAGATGTTGGCGGCTGCGCTCCTAAAGGCCAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166526-7-19,8-19-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAAAACCCGCTTCCCGCT
R:
AACATCTCATCCCCCAGGCTG
Band lengths:
174-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)