MmuEX0053027 @ mm9
Exon Skipping
Gene
ENSMUSG00000037007 | Zfp113
Description
zinc finger protein 113 [Source:MGI Symbol;Acc:MGI:1929116]
Coordinates
chr5:138592433-138596972:-
Coord C1 exon
chr5:138596858-138596972
Coord A exon
chr5:138594073-138594197
Coord C2 exon
chr5:138592433-138592524
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTGATCTCTTGCTTCTGCAGTCC
3' ss Score
9.46
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
TGGGGAGGGGCAGTTTCCGTTCTTTGTTCTGTTCTCCGTTGTGTGGGTCTGTAACAGGGTCCAACAGGACCTGTTTCGTGTCCGGCCCCCTAAGTCTTACGTCCCTGTCCCCAGG
Seq A exon
TCCTTCAAAACCTGCTGCTTGCTGAGTCTACAGCTAGCCGACCAGTGACCAGAGCATTTCCCCCTCGCCCATGGAAACCCAGGCAGACCATGCATCTCAGGCACCTCTGCCCCTGTTAGAGAGCG
Seq C2 exon
CTCTTTCTTCTTCAAAAGTCCCTTCCTTTCCTGACAAGGACAGTCTGGGGGACAAGATGTTGGCTGCTGCGCTTCTAAAGGCCAAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037007-'0-3,'0-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.647 C2=0.165
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGCAGTTTCCGTTCTTT
R:
TGAGACTTGGCCTTTAGAAGCG
Band lengths:
202-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: