BtaEX6110802 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007012 | ZNF3
Description
Bos taurus zinc finger protein 3 (ZNF3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046614]
Coordinates
chr25:36906707-36910041:+
Coord C1 exon
chr25:36906707-36906834
Coord A exon
chr25:36908818-36908954
Coord C2 exon
chr25:36909950-36910041
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTGAACTTTTGCTTCTGTAGTGC
3' ss Score
7.01
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
TCCTACAGCACTGATAGCAAATAAGTCTGAACTCCCAGGGATTTGAACAGAGGCTGCCAAGTTCACAATAATTGCTACTCTGGCCTTCTAGAGACTAACTCCAGAGAAGGAAGGAAAGAGTCCAGCAG
Seq A exon
TGCTTCCACCTTCTCATACAAACCCTGCTTCCTGCTGACTCTGAAAATAGGAGACCAGAGATCCGAGCTTCTAGTACGACCCATGGAAACTCAGGCTGATCGAGTATCTCAGGAACCTCAGGCCTTGCTTGAGAGCG
Seq C2 exon
CTCTTCCTTCCTCAAAAGGCCCCACGTTTTCTGACAAGGGCGGTCTGGGGGATGAGATGCTGGCAGCTGCGCTCCTGAAGGCCAAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007012-'4-6,'4-3,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.842 C2=0.290
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTACAGCACTGATAGCAAAT
R:
GGGCCTTGGCCTTCAGGAG
Band lengths:
218-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]