BtaINT0165241 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008349 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:HGNC:13847]
Coordinates
chr23:29861878-29862733:+
Coord C1 exon
chr23:29861878-29862004
Coord A exon
chr23:29862005-29862628
Coord C2 exon
chr23:29862629-29862733
Length
624 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TTCTTCCTCTGTACAACCAGGAT
3' ss Score
7.91
Exon sequences
Seq C1 exon
GAGTCAGTGACATTTGAGGATGTAGCTGTGAACTTCAGTCATGAGGAGTGGCAGTGTCTGACCCACGCTCAAAGACACCTCTATAAAGATGTGATGTTGGAAAATTATGGGAACATGGTGTCACTTG
Seq A exon
GTAAGAACGTTCCCTGCACTTGGCTTAGTACTTTCTCCCTTCCTTTTTCTTTTCATTGCTTTGTTGATGAGTATGGGGTCTCATATTGAAAATCAGAGCCCTTGTTCTTTATCATCAGCATCTTCCTCCCAAATTAGTTTTGAGTTGTCCCTGTTTACATAGCAAGATGTAACTTAGTTGCTGTTTTCTGATTCTCTGAAATGAAACTCTCTCTGAATAGAACAGAAATGCTTAGCTTCTGTTCTCCCTAGATTCTTGCCTCCTCAAGCCTCTCATTTTCTATTAAATGCTCTGTGTCCATCACCTAGTCATGAACTCCTTCCTAGTGGCTGAAAGCAGATTAGCCTTCCTCTACAAACTCCCATTCTCCTAAAAAGAACAGGGAAAATATAACCAACCAACAGTTTTCCAGAAACTCTTTCTTTGCCTTTCTGAGTATTGACTTCTGAGAAAGTCCTTCAACCTGTTTCATTTACAGGTTACTAGACCCCTGAATAAACCCTTTTCTCTGCCCAAATAAACATTTCTTTCCTATTTTCATATGCAAACAGAGGGATCAAGGTAAATGTTAGGACAGTTCTTTGTTGCTATACACACTTATTCCTTCTTCCTCTGTACAACCAG
Seq C2 exon
GATTTTCATTTTCTAAACCACCTTTGATCTCCCATCTGGAGCAAGGTACAGAGCCCTATGTTCAGGATCGACAGGACTGGGAGTTCCTGAGCTGCTCCTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008349:ENSBTAT00000034329:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTGACATTTGAGGATGTAGCT
R:
CTGGATAGGAGCAGCTCAGGA
Band lengths:
230-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]