BtaINT0165268 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037988 | ZNF323
Description
Bos taurus zinc finger protein 323 (ZNF323), mRNA. [Source:RefSeq mRNA;Acc:NM_001046237]
Coordinates
chr23:30121103-30122528:+
Coord C1 exon
chr23:30121103-30121576
Coord A exon
chr23:30121577-30122377
Coord C2 exon
chr23:30122378-30122528
Length
801 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATATACCTACCTGCCTTTAGGCC
3' ss Score
7.63
Exon sequences
Seq C1 exon
GTGTATCCTCCTAAATAAGATTAAATCAGAGGATCTTAAATCAGTTACACCTCCACCCCAGGCTGGATTGAGCCCTTCTAAATTAATCCCAGGATGGCTTCAGCAGGGGAACAGGATGGACTTAAGATTGTGAAGGTGGAGGAAGACCCTATCTGGGACCAAGAACCCTACCTTCGAGAGAACAACTTTTCTGGCCAGGAAGCCTCCCGCCAACTTTTTAGACACTTTTGTTACCAAGAAACTCCTGGTCCCCGAGAAGCACTGAGCCGGCTTCGGGAACTCTGTCATCAGTGGCTGAGGCCAGACACACATACCAAGGAGCAAATCTTGGAGCTCCTGGTGCTCGAGCAGTTCCTGACCATCCTGCCTGAGGAGCTCCAGGCCTGGGTATGTGAGCACCATCCCGAGAGTGGGGAGGAGGCAGTGGCTGCAGTTGAAGACCTGGAGCGAGAGCTCAGTGAACCAGAGAACCAG
Seq A exon
GTGAGAGGAGGAGGATGGCCTTCTGGACATAGAATATGAAATGAAGGGTGAAGTTTGGTGACCCAGGTTGGTTGGTTGTAGCCACATGTATTAGTTCTCTGTTGCTGGGTAACAAGTAATCCCCTAAGCTTTAATGGCTTAAAAAAAACAAATATTACCTCCCAGTTTCTGAGTCAGGTTTTGGGAGCCACTTAGGAGGATCTCTCATGAGGTTGCAGTAAAGATGTCAACCAAGATTATAGTCCCCTGAAAACCTACTGCAGCTGGTGGATCCACTTTCAAGATGGCTCACTCCCATAGTTGTTGGTAGGTGGCCTTGGTTCCTCACTGGTTAGTGGAGGGGTCTTTACTGGGTTTCTCCTTAGGGCTCATTGAGTGTCCTCACAACATGTCAGTTGGCTTCCCTGAGAGAGAGACAGAAATAGAGGAAGAGAGGATAAGGGTGAATCCTCACGTTTTTATGACTTAGTCTCAGAAGTTATATACAATGACTTCTGCCATACATTCTATTCAGTAGAAATGAGCCATTTTAAGTACAGCTCTCACTCAAGGGGAGAGAGAAATCAGGCTCCACCTTTTAGTGGAAATAATGTTGAAGAGCTTATTTTAAACCATCACACCTCATTGGGCCACTCTTGTTCTCCCCCTTCTGCTTTTGGGTGTGGAATTAAACTCTGGGCTTTCCACTGTGCAATTGCATAAAATGTCTCATACAGTTCCATATGATCTCTCTCACTGAGTGTGAGTCTAGGTTCCAGTAGTCCTCCTCTTATGAACCCAAATATACCTACCTGCCTTTAG
Seq C2 exon
GCCCCAGATTGTGAACATGGACTTGCTGAAATGCTCTCAGGGGATGCAGTGCATTTGAAGGCCAAGGAGGAATCAACAGCTTTCCAGCTTCAGTCCATGGTGATGCAGCTCAAATGTGAATCTTTTGGGGTCCACAAATTTGGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037988:ENSBTAT00000057234:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=NA C2=0.255
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=74.0)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTCCCGCCAACTTTTTAG
R:
TCCTCCTTGGCCTTCAAATGC
Band lengths:
345-1146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]