BtaINT0165297 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005882 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:HGNC:15624]
Coordinates
chr7:12164113-12166432:-
Coord C1 exon
chr7:12166356-12166432
Coord A exon
chr7:12165208-12166355
Coord C2 exon
chr7:12164113-12165207
Length
1148 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CCATTTTCCTCAATTGACAGGAG
3' ss Score
6.85
Exon sequences
Seq C1 exon
GTCCTCACTTTCAACACCAAGACTCAATTCCTAATCAAGATATTTTGGCGGCAATTCCATCCATTGGCATGAAAAGG
Seq A exon
GTAAGGCATAAAGGGATTATTCTTGGTCCTCTACAGTAGGAAAAGCCTGGGATTGCTGGAGGCTAGAAACTCAAGAAGCTCAGAGAGAGACTCAAGGCCAGTGGTACTCACCTAGGAGAAAGCAGTTTGTTGGGAGAGAGTCTATGAATGTCATGAATTGGGGGAAAAAACTCTAAATGTAGATCAAGATGTATCTTAACAGAGTCCCCAAAGCTAGCCGTTTTTAAAACCTTTGTATGTTGTGTTGGGGTATAGCCGGTTAACAGTATTGTGTTTCAGGAGAATGTTCAGTTTCAGGTGAACAGTGAAGGGACTCAGCCATACATATGCATGTCTCCATTCTCTCCCACACTCCCCTCCCATCCAGGCTGCCACATAACATTGAGCAGAGTTTCCTGTGCTATACAGTAGGTCTGTATATCCATTTTAGATATAGCAGTGTGTACATGTCCATCATGTCCATCGCAACCCAAATTCCCTACTCCCTAACTGTCCCTTTCTGTCCCCACCCCCTGCTTCCTCCCCCTCGGCCCCCCCACCCCCACCTCCCCCCACCCCGGGCCAGCAACCATCCAAAGTTTGTACTGTTAAGTCTGTGAGTCTGTTTCTGTTTTGCAAGTGAGGTCATTTATATCATTTCTTTTTAGATTCCATGTACAATGGACGTCATACGATAGTTCTCCTTCTCTGACCCAGATGTGACCATCTCTAGGTCCATCCGTGTTGCTGCAAATGGCATTATTTCATTCTTTTTAATGGCTGAGTAGTAGTCCATTACTTTATCTAATTTATCCATCCCTCTGTCGATGTACATTTAGGTTGCTTCCATGTCTTGGCTGTTGTAAACAGTGCAAAGTTTACCATTTTTGTAAATCTGACATAGATGTAGAACATTCAAGACTTAATTTAGCCTTTAACAATTAAAAAAAAAATCTTCTTCTAAGAAGTCCCATGAAGGTAATGAAAATGATGGCTCTTTGTGGCAGAGTATCCTCTTGAAGGAACTCAGGGTAGCAATGGCAGAGATACACTAGGTCGGTAAAAGTTTGAGCTATAGGACTGCCTCTCTCCTACACACAGTTTGCTTGTGGGAGAATACCTGTGACTGCAGTAAAGCCTCTGGTCTTCCCATTTTCCTCAATTGACAG
Seq C2 exon
GAGCCACCTCAGGTCGGAGAAAACCTCTATAAATACGATGAGCTTGGGAAGCCCTTTGACAGCATCAAACCGCTTTTTCAGTACCCGGGATTTCCTACTGAAGGAAACCCCTTTGAAGGCCGAGAGAGCCGAAAATCCTTCCTCCGGACCACCCGCCTCATCGTGCCCGAGAAAGTCCCCAGCGGGGATAAAACCTACACGTGCGACAAATGTGCAAGATCCTTCAGGTACAGCTCCGAGCTCATCCGTCACGAGAAGACGCACACCGCGGAGAAGTGCTTCGAGTGTCAGGAGTGCCGGCAGGCCTTCAAGTACTTCTCCAACTTGCGGCGCCACCTGAAGACCCACGGCGGCGAGAAGCCCTTCGAGTGCAGCCAGTGCGGGAAGACCTTCACGAGGAACTTCAACCTGATCCTGCACCAGAGGAACCACATGGGTGAGAAGCCCTACTCATGCAAGGACTGTGGGAAGGCTTTCACCCAGCCATCCTCCCTGAGGAGCCACATGAGGACCCACACCGGAGAGAAGCCCTTCGAATGCGGCCACTGTGGGAAGACCTTCCGGGAGCATTCGTCGCTGAAGACGCACGTGCGCACCCACACCAGAGAGAAGCCCTACCAGTGCAACCACTGCGGGAAGCCCTTCCGCACGAGCACCAACCTGAACGTGCACAAGAGGATCCACACTGGTGAGAAGCTGTACGAGTGCGCCACCTGCGGGCAGGTCCTGAGTCGGCTCTCCACCCTCAAGAGTCACATGCGGATCCACACCGGAGAGAAGCCCTACCCGTGCCCAGAGTGCGGACGAGCCTTCGGGGAGCCCTCATCCCTCAGGAAACACGCGAGGACCCACACCGGCAAGAAGCCCTACGTCTGTCCGCAGTGCGGGCGAGCCTTCGGCCAGTCCTCGCACCTCATCGTCCATGTGAGAACCCACACCACGGGGAGACCCTACGAATGCACTCAGTGTGACAAAGCCTTCCGACACAGCTCTTCACTCAGCGTGCACAAGAGGATTCACGCCAGGGGAGAAAACGTCAGGACTGACAACCTTCCTTTATCTGTGTCTCTTCCCATGGAAGGGCCCCTTGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005882:ENSBTAT00000007733:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.178
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF127602=Zn_Tnp_IS1595=WD(100=13.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCGGCAATTCCATCCATT
R:
GAAGTACTTGAAGGCCTGCCG
Band lengths:
351-1499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]