HsaINT0186902 @ hg19
Intron Retention
Gene
ENSG00000160961 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:15624]
Coordinates
chr19:14828469-14831772:+
Coord C1 exon
chr19:14828469-14828545
Coord A exon
chr19:14828546-14829039
Coord C2 exon
chr19:14829040-14831772
Length
494 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
ACATTTTCCTTCATCGACAGGAG
3' ss Score
8.35
Exon sequences
Seq C1 exon
AACCTCAGTGTCAACCCCAAGAGGCAATTCCTAGCCAAGATACTTTTACAGAGATCCTGTCCATTGATGTGAAAGGG
Seq A exon
GTAAGGCTCACCAGGGATTATTCATGGTTCTCTATAGTAGGATGAGTCTGGGGTTAACCGTAAGTTAGAAAAGCAGCCCAAGAGCCAAGAGCGATTCGAGGCAAGAAGTGTTTACCCAGAAGGAAGCAGTTTCTTGGGAGAGAGTCCGTGAATGTCATGAATTGGTGGAAAACTAAATGTAGATCATGTTCGTACAAGTAAGCATTTTCACAGATATGACACATACAAAGTGTTTAAGACTTAATTTAGCCTTACACAAATTGGAAAAATTCTGCATCTAAGAAGCTGCATGAAAATAATGAAAAGATAGCTCTTTGCAACAGAGTATCCACCCTATTCCACTTGAAGGAACTCTGGATAGAAATGGTATGGACTCCATAAATGGTAAAAGTATCAGATATAGAACTGTCTTTTTCTTACATTCATTTCACATAGGGGAGAATATCTGTGAATCTAATAAGGCCTTTGGTCTTCACATTTTCCTTCATCGACAG
Seq C2 exon
GAGCAACCTCAGCCTGGAGAAAAACTCTATAAATATAATGAACTTGAGAAACCTTTTAACAGCATTGAACCACTTTTCCAGTACCAGAGAATTCATGCTGGAGAGGCATCCTGTGAATGTCAAGAGATTAGAAATTCCTTCTTCCAGAGTGCCCACCTAATTGTGCCCGAGAAAATCCGTAGTGGGGATAAATCCTATGCATGTAACAAATGTGAAAAATCCTTCAGATACAGCTCTGACCTTATCAGGCATGAGAAGACTCATACTGCAGAGAAGTGCTTTGACTGTCAAGAATGTGGGCAAGCCTTCAAATATTCCTCGAATCTCCGGCGACACATGAGAACCCATACCGGAGAGAAGCCATTTGAATGTAGTCAGTGTGGGAAAACCTTCACGAGGAACTTTAACCTGATTTTGCACCAGAGAAACCACACAGGAGAGAAGCCCTACGAGTGTAAAGATTGTGGGAAAGCCTTCAATCAGCCATCATCCCTCAGGAGCCACGTGAGAACTCACACTGGAGAGAAGCCCTTTGAATGCAGCCAGTGTGGGAAAGCCTTCAGGGAACACTCTTCACTGAAGACACATCTGCGAACCCATACCAGAGAGAAACCATATGAATGCAACCAGTGTGGCAAGCCCTTCCGGACGAGCACTCATCTGAACGTGCACAAGAGGATACACACAGGGGAGAAACTGTATGAGTGCGCGACTTGCGGTCAGGTCTTGAGTCGTCTTTCAACCCTGAAGAGTCACATGCGAACTCACACTGGAGAGAAGCCCTATGTGTGCCAGGAATGTGGGCGAGCCTTCAGTGAGCCCTCATCCCTCAGGAAACATGCAAGGACTCACAGTGGCAAGAAGCCCTATGCATGCCAGGAATGCGGGCGAGCCTTTGGTCAGTCTTCACATCTTATTGTACATGTGAGAACACACAGTGCCGGGAGACCCTATCAATGTAATCAGTGTGAGAAAGCCTTCAGGCACAGCTCCTCACTCACTGTACACAAAAGAACCCATGTGGGAAGAGAGACCATTAGGAATGGCAGCCTGCCTTTATCCATGTCTCATCCATACTGTGGGCCCCTTGCTAATTAACTTCCATTTTGTAAAAATATAAACACATGGGGCTATGACTTTCCCTCGTAATACTCCTTTAGCTGCATCCTGTGTTTCAATGTATAATATTTTCATTTTGGTTTAATTGTAAGTATTGTCTTAACCTCCATTATCGTTTATTCTTTGACCCATCTATTATTTGGAATTAGATTTTTCAAAACTAATATGTGGATATATTTTCATAGAGGTATAATGACTTATAGTGAAATGCATACATCTGAAGTGTACAGTTGGATGAGTTTGACAGATGCATACATGCATGTAACCACCACCCCATTCCAGATATAGAATGTTTCTATCTCTCTGGAAGGTTCCTGCATGTTATATGGCTATTTCTTAGTTGCCTTTTTGTTGTTGGTTTCTAATTTAATTACATGGTGAGAAGAGTATGTGGCCTCTTTGTTACTGAGTCATAGGTATTTGCTGAGATTTGCTATTAGGTCTGGTGTGGCTTATTCTTCTAGCTGCCAACCCAAATTACCCCTTCCTCCTTAGAAAAGAACCTGGGTTTTCTGTTCAGATTGGCAGTGTGCACTATTAAAAAGCTTCCATCTCCCGGCTGGGCACGGTGGCTCATGCCTCTAATCCCAGCACTTTGGGAGGCTGAGGCTGGGGGATCACCTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAATCCCCTCTCTACTAAAAATATAAAAATTAGCCAAGTTTGGTGGCATGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTCTTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAAACTCTGTCTCAAAAATAATAATAATAAAAAAAAGCTTCCATCTCCCAGCCCTTCTTGCAAGCAAGGGCAGGCCATTTCCTCCGGTCCTGGCTAGTATGAATATGAGAAGTCACTGGATGTGACTCTGGGGAAGATATTGTGTTCAGGGATGGTTTCATGTAGCCACATCTCTCCACTTCTTGCCTTTTGGACAAGTAGACATGATTTCTAGACCTAGAGGAGCCCTCCTGTGACCATAAGGGTAAAAGCCGCAAGCTAAGAAGAGGGTGGCCGGAAGTCATAACCATCTTGCTTCTGTAATCTAAAAAATATTTAGGATAGATTTAATAGAATTGGCATATTTATGTGATTGCAGCAGCCCTGGACTATTTATTTCTGGATGTCCCATACATGAAAAATATGCACTTCTTACTGGTACAGTTTTCTTTTGTTTGTTTTTGTTTTTGGTGGGAGGTTTATTTCACCTGAATATAATTCCTAACTGATGCACTTAGTATATGTCAGTTTTTATAAATGCTTCATGGATGGTTGAAATCAATGTATTGTATTCTACAAATGTCTGCTAGATCAAGCAAATGTGTTTAAAAACCATCTACACATTTATAAATGTTGATCTGTGATCTAGCATTTATTGAGAGAGGTATGTTAAACTCTCCCACCATGATTATGTATTGCTGAAAAATCTTTGTCATTCTGTCAGTTTTTAAATTTATGTATATACATACATATATATGTTTTGAAGCAATGAAATTAAATATAGATACTGACATTTTTTACATTTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160961-ZNF333:NM_032433:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF127602=Zn_Tnp_IS1595=WD(100=13.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF0009621=zf-C2H2=WD(100=6.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAACCCCAAGAGGCAAT
R:
ACAGTCAAAGCACTTCTCTGCA
Band lengths:
358-852
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)