BtaINT0165299 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005882 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:HGNC:15624]
Coordinates
chr7:12174901-12176257:-
Coord C1 exon
chr7:12176175-12176257
Coord A exon
chr7:12175018-12176174
Coord C2 exon
chr7:12174901-12175017
Length
1157 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CCCTCTACTCCTTTTCCCAGGGG
3' ss Score
9.19
Exon sequences
Seq C1 exon
ACTGGGAATCTCAATTTACACCCAAAGAGCCTACTTCTCTGCAGGATATTTCAGAAGAAAACTCATCCTATAATTTGCAGATG
Seq A exon
GTAAGATTCATGTGGGACGATTCTTCATTCCCTTTCATAGGAGAAGGTGAGGAGTAGCTGAGTTGGATGCACACACCAGGGCCAGGCAGACACTTGAGCCAAGGTGTTTCCTCCAGGACATGAAGTATCTAGAGGGAGCACCCATTTTGGGTGATTTAGGGTGGGGGGAGTATTGGCTTGGTGTGTGAGAACTCCATAAAGGAGGCGGTTCAGAGTGTGGGCTGTGGGTCACGGGAGATGTGGATAACTAACTGTGGCCCTGTGATTGACAGATACCAGGTAGGCAGATACAGAACCTAGGAAAACACAGAACAGTGTGTTCATATTCAGAACTAAATGCTCCCAACTTTTCTATAAAAACCTTTTTAGGGACTCCCCTGGCAGGCTAGTGGTTAGGACTCTGCAGTTTCACTGCCAGGGTCTCAAGTTTAATCCCTGGTCGGATTAAGAAGATCTCACAAGCTGTGCAGTGCTGCCTGGAACAAAGCAAAAACCTTTCTAGTAAAATATCTCGCAGTGCCTCTGAGGGTTGGTGGTCTACCCTCCAGCCACGGGCCCCCCAGAACCAGAAAAGGGTCAGGTGTGTGCGTCCAAGTCCCTGGTTCAGTCGGTCCTCAGAGACCCTTGGTAGTTGGTGCCCACAGTGAAGTAGGAGAGTTTCCAGGTCTGAAACTGCCAGACCCGCATTGCCCAAATTCTTTTCTTAATTAATTAATTTGGCTGGGTCTTAGTTGTGACATGGGCTTCCCTGTCGCTCAGACAGTAAAGAATCTGCCTGCAATGTGGGACCGACCTAGGTTCAATTCCTGGGTCAGGAAGATCCCCCTGGAGCAGAGAATGGCAACCCATTTCAGCGTTCTTGCCTAGAGAATCACGGGTAGAGGAACCTGGCGTACTACAGTCCGTGGGGTCTCAAAGAGTCAGACATGACTGAGCAATTAACACTTTAGTTGTGACAAGTGGGATCTAGTTCCCTGACCAGGGATAGAACCCAGGCCTACTGCATTGGGAGTGCAGAGTCTTAGCCACTGGACCGCCAAGGAAGTCCCACGGACCCCAAATTCTGATGGTACTACCCCCAAACTTTGGGTCTCTTAGGGTGAGGACAGCCTCCATACCACCTCTTCCTGCTTAGCACCCTCTACTCCTTTTCCCAG
Seq C2 exon
GGGCCAGAGCTGGACCTGAAGATAGAGATCAAGTCTGAGATGGAAGAGGAGGTGATGCCTCCAGCTCCAGAGGACTGGTCAGCTCTCCAGCAGTCTTCTGAATATGCGGTAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005882:ENSBTAT00000007733:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGAATCTCAATTTACACCCA
R:
CAGGCCTACCGCATATTCAGA
Band lengths:
200-1357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]