HsaINT0186906 @ hg38
Intron Retention
Gene
ENSG00000160961 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:HGNC:15624]
Coordinates
chr19:14699199-14705170:+
Coord C1 exon
chr19:14699199-14699281
Coord A exon
chr19:14699282-14705053
Coord C2 exon
chr19:14705054-14705170
Length
5772 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ACCCTCTTGTCTTTTGCCAGGGG
3' ss Score
8.94
Exon sequences
Seq C1 exon
CCTGGGAATCTCAACTTAAACCCGAAGAGTTGCCTTCTATGCAGGATCTTTTGGAAGAAGCATCCTCCAGGGACATGCAAATG
Seq A exon
GTAAGATGCACGGGGTTTTCCCCGGCTCCCAGCATGGGAGAAGTTGAGGAACACGTGAGGTGGAAATACAGGACCAGAGCCAGGGAGATGTTAGCAGCATGGGTGTCTCTTGGAAGGGAAACAGTGTCTGAGGGGAGTGCCTGTGACTTCTGAATTTGGGCAAACCCAGACTGTTGCTCAAGACTTTTTTTTTTTTTGAGACAGAGTCTTGTTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCATTTCAGCCTCCACCTCCCAGGATCGAGTGATTTTCCTGCTTCAGCCTCCCGAGTAGTTGGGACTGCAGGCGTGCACCACCACGTCTGGCTAATTTTTGTATTTTTTGGTAGAGACAGGGTTTCACTGTGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGATCTGCCTGCCTCAAGATTCTTTTTTTCTAGAAGGTTTCCTGAAGGAAACATTTTAATAAATGTGAGTCAGACATTGAGCGTGCGAAATACGACTTCCTCCTCAGCAACTGTCAGAAAAACCCCTCCTGGTAGAGAAGCCCCATTGTGAATAGGAGGCAGCCCTGTGGTAGAGCTGGCAACACACTCGACGAACTCCAGCTGTCTAAACAAGGCATGGCTTGAAAATGCTGAGAATATGCTCCCGGTGGGGAGGACCCCTGGGCACTGGCACAGATATTGGCGAGCTTTCCACCATCATTCACCTCTTTTTTTGGTTTTTAAAAGACAGGGTCTTGCTCTGCCACACAGGCTGGAATGCAGTGGCATGTTCATGGCTCACTGCAGCCTCAAACTCCTGGGCTCAAGCGATCCTTCTACCTCAGCCTCCCGAGTACCTGGGACCACAGGCCTGAGTCACCATGCCCAGCTAATTTTTTTCTTTTTCTTTCTTTTTTTTTTTCTTAGAGATGGGGTCTTGCTATGTTGCCCAGGATGATCTCGAACTCCTGGCCTCATGTGTTCCTCCCACCTCAGCCACCCAAGTAGCTGGGACTACAGGTGTGAGCCAGTGGGCCCAGCCATTACTCACCTCTTGTCAGGAGCAAGCTCCACCTGGAGAAAAGGCTCCTGATGAGTTGAAAGGAGGCAGGAAATGTTTCTGGAGGAGCTGTAACCTGGATGTGGGTGAGAGAACTGGCAAGACAGAGGCCACTTTGATTGGAAAGAATGTGGGAAAGTTGTTGGGCATCCTTTTCTTCTTAGGAGACCAGTCTAGATCCCACACTGGAAGGAAGCCCTTTTCAGTGTGGAAAAAGCCTTCCATATGAGCTTGTACATTAATAGTACAGGAGAAAATATACACGGAGTCCCCACCATCCCCCCTTTGGCCCTGAATTTCCTCCGCCTCAAACAAGAGGACCTTCCAAAGTTTGAGTTCCCATTCCTGAGTATTGGTGAAAGTTAGAGTTAGGGTTTGGTTAGAAGGAGGCACAGAGCTCAGCCTCACCCCCAAGTGGGGCGTATTAGTCCCAGGGTCAGTGAGAACCCCGGGATCCCTCAGTCAGTGCCCCTTCCCCTGTGTCATGGATGGGTGTCAGCATCAGAGCGTCAGGGATGCCCCACACAGTGGATGGGGTGCAGTGGCCTCGGTTTTAGAGACCCACATTCAACTTCTTTGCCAGGGAAGCTTCTGGAACACAGAGAAGCCTCAACCCTGTGCAGCTTGGTGTGGGCTGCAGATCAGCCAAAACTCACAACCTGCCTGGCTGCAACAGACCCCTGGGCAGCTGACAGCCCTCCTCACTCCCCAGGCCCTCCTCGCCCTTGGTTTACACTCTTGTTTTGGTGGAGAACACCCTCCAGTAGCTCCTTGGGATCAGGTGCTTGGGTTTTGAGACCTTGACTTCTGAGAATGTCTTATCAGGGCTGCTGGATTGCAGGTTCCTCATCCGATGTGGTGGTTGCGGTAAGCCTCATTACAGAACATCCTTTTTTCTTTCTTTTCTTTTTAAATAGATATGGGGTCTTGTTCTGTCACCTAGGCAGGAGTGCACTGGCACGATCATAGCTCCCTGTAGCTTTGAACTTATTAGCTCAAGTGCTCTTCCTGCCTCAGCCTCCTCCCGAGTAGCTGGGACTACAGGCACGCACCACTACACCTGGCTGATTTTAAAAAATTGTTTTGGAGACGAAGTCTTGCTGTGTTGTGCAGGCTCCCATTGCAGGGCATTCTGTGTGTCATGTAGCCCCCAGTGCTTGTTGAATGAAGGAAGGAATGGATAAGGTGTTGCAGAAGGCATCTCCAGTTCCCATCCTCCACCTCCATGTCTCTCTTGCTCAGCAGGTGGACCCCATGTGAAGAAAGGAGAGAGGGAGGGAGAATGAGCAACGAGGGCCCGGTGCCCTCTTTGTTTCTGTGGGCTCTCTCCTTTCAGTACAGGGCTCCAGTGCCCTCCACAGAACTCCACACCCAGCCCAGCAAGCCCCTCCATAATGGGTGCTGAGAGTGGCAGGCATGGGGCTCTTGTTACATCAGAGCCCCAGGAAACAGGCGGTCACAGACTATTCTGAGTGGGCAGAGGAGGTCCACCTATGGACACACGTTTAGAGAAGCTGAGGAGTTCATCCCTGAAGACATCCAGCCCGTGAGTAGTAGAGGTGGGTTTGGAGCTAGGAGTTGAACCCAGACCTAACCGCAGAGACCACAGTCTCAGCTGTCAGGTTCTACTGCCTGACGATCATACAACCTGCTGCTGGGTTGATGGTGCTGACCCTTTAGGTAGCCCTTCCAGGCCATGCCAGGCATCATTGTGCCTTGTCACAATCATTGAGACCCTGTATGGTGGCTCCGAGACCTCCCTGTCACATGGGAAAAAGTGCTGATGGCCAGGGACAGATTGAGTCCCCATGGCCTCCCTCTCTTTGGTCGGCTGGTCCAGCAGAGGGACCAGTGAAGAGGAGGGTGGGAAACTGCTCTTAGAAGAGTCCCAAGGAAGCCAGGCACAGGGCCTCACCCCAGAATCCCAGCAACTCCGGAAGCTGAGGTGGGAGGACCACTGGAGCCCAGGATTTTGAAACCAGCCTGGGCAATATAGCAAGAACCCATCTCTGCAAAACATACAAAAATTAGTCATGGCTAGGTGTGGTGGTGTGCACCTGTAGTTCAGCTACTTGGGAGGCTAAGGCGAGAAAATTGCTTGAGCCCAGGAATTCAAGGCTGCAGTGAGCCATGTGTTTGCACCACTGCTCTCCAGCCTGGGTGACGGAGCAGGATTCTGTCTCAAAAAAAGAAAAATAAAACTCCCCAAGGGAGGCTGAGGAACAGGCCTCTCCAGGCTCAGCCCTTCTTCTGTCCCAGGCCCACCCCACAGCTGCCTCTTCTGCAGACACCTGGCTCCTTGAGGCTGCAGTGTTGCTGCTTTCATCCTCTGCTGCATCCGCAGGGCCTGCACTAGCAGTGCCCATGTCTTAGTCTGTTCTCACCCTGCTGATAAAGAGATACCCGAGTTGGGTCATCTATAAAGGATGCAGGTTTAATTGACTCACAGTTCAGCATGGCTGGGGAGGCCTCAGGAAACTTACAACATGGCGGCAGGGGACGCAAACACATCCTTCACATGGTGGGCAGCAAGGAGAAGTATAAACAAAAGGGGGAAAAACCCCTTATAAAACCATCAGATCGTGGCCGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAACCATCAGATCTTGTGAGAACTCACTCACTATTTCGAGAACAGCAGCATGGGGGTAACTGCCTCCATGATTCAATTACCTCCCACCGGGTCCCTCCCATGACATACGGGGATTATGGGAACTACAATTCAAGATGAGATTTGGGTGGGGACACAGCCAGACCATATCAGCCCAGTACATATTTGTTCGACAAATAGGCAGAACGCCTAAAAACAGTTTCTTTAAGTTGAGTGACCTGTGTCAAAATGATTCTGATGGAAACATTTGTCTCAAAATGTACCCGTGGGATTTTGATTTATGACACAGAGAGGCCAATGTCATTGGAAAATTTTGATTACTTGTATTTCCTGGGAGGACAGGGCACACCATGCCACACAGGTCCACACAGGGAAGCACCAAGGTCAGCCTGGAGGCAGAAAGGAGCGAGGGGATAGCCCAGGCCAGAGCCTTTCTTGGAGTTTCCACAGGGTAAACCACTCAGGATTTGTCAGTTTGAATAATTTTAGTGGACCTTGGGGGATAGGTGCTGTCCCTGGTTGATTTAGGGCAGGGGAAATATTGGCTGGGTGAGAGTGAGATAAGGAGCTGGTACGGCATGTGGGCTGTGGGTCACGGGATTTGGAGATGAAGTTGGCAGGCAGTTTGGCCCTGTGAATGATGGATGCCCTGTGGACAAGGACAGCATTCCTGTTCAGAACCAAGATCTCCCGACCTTGCTTTCTTTTTTGGTTTTTGGGTGACTTAAACAGCAGAAACTTATTTTCTCACCCTTATGGAGGCTGGAAGCCCAAGATCAAGGTGGCGGCAGGGCTGGGTTCTCCTGAGGACTCTCTCCTTGGCTTGCAGGTGGCCACCCTCCTGCTGCCTCTTCACACGGCCATCCCTCTGTGCCACACCTTTCTATAGTGAAATGTCTCATAGCCTCTTCAGGGGCTCTGTCCTAACCTCAGGTCTGTCTTTGTATCTGCAGTGTGTTCAAGCCTCGAGACCCTCGGTGGTAGCTGGTGACTGCCGTAGGTGGGGAGTAGTTACTAGGTCTGAGGCTACCAGATGTCAGACCTGTGTACCCTGACTTTTTTTTTAAGACACAATCTCGCTCTGTCGTCCAGGCTGGAGTGCAGTGTTGTGATCTCAGCTCACTGCAACTTCTGCCTCCCAGGTTCAAGTGATTCTCATGCTTCAGCCTCCTAAACAGCTGGGAGCTTAGATGTACACTACCACACTTGGCTAATTTTTGTATTTTTAGTAGAGATGGGTGTATTAGTCTGTGTTCACACTGCTGATAAAGACATACCCGAGACTGGGCAATTTACAAAAGAGAAAGGTTTAATTGGACTTACAGTTCCATGTGGCCAGGGAAGCCTCACAATCATGGCAGAAGGCAAGGAGGAACAAGTCACGTCTTACATGGATGGCAGCAAGTAAAGAGACCTTGTGCAGGGAAACTCCCCTTATAATAACCATCAGATCTCGTGAGACTTACTCATTATCACGAGAACAATCATGGGAAAGACCTGTCCCCATGAATCAGTTACCTCCCACTGGGTCCCTCCCACAACACGTGGGAATCCAAGATGAGATTTTGATGGGGACAGAGCCAAACCATATCAATGGGGCTTCGCCATGTTGGCCAGGCTGCTCTTGAACTCCTGGCCTCAAGCAATTCTTCACCTCAGCCTCCCAAAGTGCTGGGATTATGGGCATGAGCCACTGCACCCATCCCCATTTGCCTTGACTTCTGGCAGCCCTAAGCCCCAAACCAAAGGTCTCTCGGGCTGAGAACAGCTGTGGTGCCAACTCTGTCCTGCTCAGCACCCTCTTGTCTTTTGCCAG
Seq C2 exon
GGGCCGGGGCTGTTCCTGAGGATGCAGCTGGTGCCCTCCATAGAAGAGAGGGAGACACCATTGACTCGAGAGGACCGGCCAGCTCTCCAGGAGCCGCCTTGGTCTCTGGGATGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160961:ENST00000292530:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains