BtaINT0165340 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008902 | ZNF345
Description
Bos taurus zinc finger protein 345 (ZNF345), mRNA. [Source:RefSeq mRNA;Acc:NM_001035327]
Coordinates
chr18:47845659-47846224:-
Coord C1 exon
chr18:47846142-47846224
Coord A exon
chr18:47845822-47846141
Coord C2 exon
chr18:47845659-47845821
Length
320 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGA
5' ss Score
2.95
3' ss Seq
TCTTTCCATTGTGTTTGCAGATG
3' ss Score
10.65
Exon sequences
Seq C1 exon
CGGTAAGGCAGGCTCGGTGGTAGCCGCTGCTCTTCTGAAGAAAACAAGCGCGAGACGGGCCAGGTTCTGCGGACCAGATCGAG
Seq A exon
GTTGGATTCGGGGGCCTCAGGCCGGAGTGAGGGCTTTGCACTTGTGAGACTGGGCGGCGCGGGGTTAAGCTTGTGCGGCGGTAACTGGGCGCCGCCCCGGCCTGTTCCCGGCGGTCCTGCCCGTCGCCTTCCTCGCCTCGACCACCGAGGCCTGGCCGTAGAGGAAAGGCCTGAGAGGGAAACGGGTGGTGGAACCTCTGAATGAAAGTCCCCTGCAAGGCGCGGTGGCCGCCCGAGCGTGGGTGGCTGTGGTGTCTGAATTACAGCCGACCCAGAGCCGCGGACCTTCTCTCGTCTTTATCTTTCCATTGTGTTTGCAG
Seq C2 exon
ATGGTGGGTAGCGACGGTCAAGGGGGCGTGGACGGTGGGTGTTGACCGCGTCCAGAAACGCCTGCGATGTAATCATCCGGGTTTGCTTCCCGAGCCCTGTCAGTCTCCAGAGGCCTGTGAAGTGAAGCGAATCGCTGCTGCGTCTCTAAAAGCCGCGTTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008902:ENSBTAT00000006317:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTAAGGCAGGCTCGGT
R:
AAAGAACGCGGCTTTTAGAGAC
Band lengths:
246-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development