HsaINT0185517 @ hg19
Intron Retention
Gene
ENSG00000120784 | ZFP30
Description
zinc finger protein 30 homolog (mouse) [Source:HGNC Symbol;Acc:29555]
Coordinates
chr19:38145613-38146313:-
Coord C1 exon
chr19:38146001-38146313
Coord A exon
chr19:38145781-38146000
Coord C2 exon
chr19:38145613-38145780
Length
220 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAC
5' ss Score
4.07
3' ss Seq
GTTTCCATTTGTGCATGCAGGTG
3' ss Score
8.72
Exon sequences
Seq C1 exon
TGGGGCTGGGAGCCGGGCGCCACTGTGGCCGCTGCTTTTCTGAGGGAAAAGAGCGCGGAGTGGGCCAGGTTTTGCAGGCCGGGCCAAGGTGGAGAAAAGGTTCCTGTGGAGCCTCAGGCCGGTGTGCTTTTTTTCCCGGGACTGAGCTTCTGCAGCCCTGAGGCCTGGAGGCCCGGGCGGTAGTAACTGTGCCGGACCAGGTTCGTGGGTGCGGCCTGTGGTGCAGTTGGAGACCGAGGCCCCGCGCATCCTCGTCCGCGCTTCAGCCACTTAGGCTCGGCCGTAGCGAAAAGGCCCAAGAGGGAAGTCAGAG
Seq A exon
GTGAACGCCCCAGGATGAAGGTCCCCTGCAAAACGCTGGGACCTAGATTTGGGGTGGGTGTCTGGGGTCTAGGAGGACACGCTGGACAGTTCCGAAAAGACACAGTGGGTGGTCCCGGGCGTGGGCAACCGGGTGCGGAACTACAGCGTACCCGGAGCTGCGAACCCAGACGCGGGTGACTGCTGACCCTCTGCCCTGTCGTTTCCATTTGTGCATGCAG
Seq C2 exon
GTGGCGGTTAGTTGGGGCCAGGGAAGCGTGGAGGGTGGGTTCCAATCGAGTCAAGAAAAGCCTGGGGTGTCCTGAACTCTGCCTGCTTCCCCAGCCCTGCCAGTTTCCAGAGAAGGCGCTTGAGAAGGAGAAACGAATCGCTGCTGCTCTTCTAAAAGCCGGTTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120784-ZFP30:NM_014898:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAGGTGGAGAAAAGGTT
R:
CCCCAGGCTTTTCTTGACTCG
Band lengths:
299-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)