BtaINT0165360 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010046 | ZNF350
Description
Bos taurus zinc finger protein 350 (ZNF350), mRNA. [Source:RefSeq mRNA;Acc:NM_001075708]
Coordinates
chr18:58212122-58215768:+
Coord C1 exon
chr18:58212122-58212193
Coord A exon
chr18:58212194-58215582
Coord C2 exon
chr18:58215583-58215768
Length
3389 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
AATTTTCTCCTCCACCCAAGGTC
3' ss Score
5.82
Exon sequences
Seq C1 exon
AGTTCTGGAGGTCAAAGCAGTTCGCGGAAGCACGACGCTGTTTAGGCGGATGGTCAGTCTGAGGAATATCAG
Seq A exon
GTTAGCATGCAATTTTTGTCACTGGAATTTGTTGTTGTTGTTACAGTGGTGGTATTTTTTCTTCCAGGGTGATAGAGGACTTCGTGCCGTCTGGACCCATGAGATTATTGCCAGAGGGCAGAGGGGGAGGGTAGAAATGCCGAGGTGGTTATATTTAAGGGGAACCAGGTGGGTACCGGATTTGTGGAGAACCAGAAGTGGAGTTTGTCTGTGGTTTGGATTGGGAGCGTGTCCTGTGAATCAGTGTAATTAGATTGTGTAGAGATCAATACTCTTCCAGTTGTCAGACCTTGGGGTTTTGTAGATTACTTGGCTTGCAAGGTGTACATGTGTTGAAGAAACCAGTAATGGAGAAACCAAGCACCGCACTCTGAGTTGGAGAACTCAGGTTTACTAAGCAGGTGGGCCCAGAGGAGTTAACACTTCCAAGCTCTGAGCCATAAACAAGGGGTTTATAGAGTTTTTATAGACAGACTATAGTAGGCAACATTAGCTGCTAATGCTAAGCTGCTAAGTCACTTCAGCTGCTAATAGGGTGGTTTAAACTAAGGGGTTTCGCGCGCGCGGGAACAGCGGTCAAGACGGGGAGGGGGATGCCTGACCTTTACAGGGACAGGCATGATTAAGCAGGATTGCAGGGGCCGGGCAATTGCAAAGAGCTGGACAAGGGTAAGTGAGATAAGCTCCAGTTCCTAGTATTGTAAATCCCCACTTCCTGAGACTACGTGACCTGTGATCCAAACTTTGCAAGGAGCAAGCAGAGGCAGAACAAGCAGGAGGTTATGTAAAATTTTAACTTTTCCTCTTCGGTGACTACGATCGCAGTATTGGATTCAGGTTAGGGATTTAATTCGGGGCTCAGTGGTGGGCGGGGACTGGGTCATCACATGAGGGTGTCTGGCCCAGGTTTTGGGTTAATAAGGAAGTGTGTAGTGTAGTCAGTATCCGGTACAGAGAGATGTGTGATGGTTGAAGAGTTGGACGCCAAGGATGGTTGTGTTGGTAGTTGAGTTGAGGTTCCAGTTTCTGCTGGTGCGACAGAAGACTGTACATCCCAGGGCAGTAGTTCCAAACCATCTGTATTTTAGCTTTTTTTGTGTGTGTTTTTCTTTTTAAATTTGCTGAAGTATAGTTGATTTACAATGATAGGTTAATTTCTACTGTACAGCAAGGTGATTCAGTTACACACATATATATACATTCTCCTTGATATTAATTTCCATTATGATTTATGACAGGACATTGAATATAGTTCCTTGTGCTGTACTGTAGGACCTGGTTTAGCTTTTAATCGAGGAGTTGACTACAGGACGAGAGGCTGAACCAGCAAAGCCAATCTGTTTTTGTACCGCCTGTGCTGCTTTCACATAGCAAAGGCAGAATATAGTCGTGACAGATATTCTGGACTGCAAATTTGAAAATCTGTCTGGTCTTTTTTGCAGAAAATATTTGTCAACACCTGCACTCACCTCCTAATATCGGTATATTGCAACAGCACCATTACTTACCTCCCTGACATACGTGAACGTTAGCATACATTATTTGGTAACAGAATCTTCTTTTTGTTTAATCATCTGGCAAGGTGACCTTTGGCAAGGCCACCCATATCCCAGTTTACTAGGAAGTCCTGGCTGGTCTTAGTCAATCGTGTATTTCAAGTTCCCATTGCCAGTGATTGAGTTAGTACTAAGAAATGAGCTTGGGCATTTCTAACCAGCTATGTATGTAGATGTCCTTTGGGGTTTCTAGGGGAGCATTTTTTCTTTCAAATAAGTATCATTTCATGTTGATAATGATATTGCTGAAAAATATCGGCCCAATTTTCTAATGTTAACTTATTCTTCCGCATTTTTCTTTATGGTGTTATAATTATTTATTCCTCATTATAGTTTATTTAGTTTTTTCTGTTTTCAACTGTGTATATTTATACAGCACATCTTCTTTATCTGTTCATCTCTTGAAGGACACTTGGGTTGCATCTGTGTCTTGGCTATTATATTTTAGTTCTGCTGTGAACATTGGGATGCCTGTATCTTTTCAAATTAGAGTTTTCTCCACATCATGCTTTTTTTTTTTTTTTTTTAAATGTCAGGGTCAATATTTGTGAGAATCATTCATGTTTTTGCACATAGGTATACTTTTTTTCCCCCCTGTGTAACAGGGTCAGGCAAATATTAAATATCCACATAGTAAATATTTTGGGGTTTCCATGCCACCATTCTCTCACATATACTTCTTTATTTTTGTTTTATAGCCCTTGAGAAATGTAAAAGGCATTTTTAGCTTGAAGCTGAGCAAAGACTGTACTTTTCCAATATTATTCTGTTGTTTGAATATATGATTTTCCGACTATTTATGAAATGTGTGTTGTTTACATTTTGGTTTATTATGAATAATGTTACTATGGAAATTCATGACAGTGTTCTCTTGTTCAACCCAGATTTTTGGAGGGATGTTATTTCTTAGATGTGTTCCTCAGAGTGAAGTTGCTTCTGGCTTGAACATGTGGAGATGCAGGAAGAGTGACCCTCCTGTAGGGGGCACGCCTCACCCTTCCACACATACCCTGTCTTGGGAACCTCTTCCATCTACCTGTTCCTCAGTTATAAAGTTATTTATGTTTTTTTTAAAATAAATATAGAACCTAAAATATATATCTGAGTTTTATGAGGTGTTCTAGCATCTAGGTTCTGTTATTTCCCTCTTCTGATAGCGCCACAGTCTATGTGCTTTAAGAGAATTGTTAGTGTGCATTATGACACTGAAGAGTATGTACCACATATAATTTTTGTTTGTCAAATTCTTGTTAATTTGTACTTTTGTGCTTTCTTCTGGACAATATAGTAGTTTTAGAGCACTTCAAATTTAATTATGTATGATTATTTTGTATTTTAATTTTTATGTATTTGAAACCTCCTAAGATATTACCATTATTGCTTATAAGAAAGCGTTTCTGGTTTGACCAGTGCATTGGTTTTCAAAATGAGTGCACGTGCTCACGGGGCATATAAGAACATTTGACGAGGTCCCTGAGTACACATGGTTTAAAGGAAACAGTGCTCAGGACCTCTCCTGCCATGTGGTCCCTTTTGTATACAGAGCCACTTGTGATTCTCATGCCCCTGAGGCCTGCTGCTGTGATGGATCTCGATTCCCTCATCTCCTTTGACTGTCACACCACTTCAAGTTCACAGAATAAAAGAATATATCACCAGCACAGTGAGAAGCTTAGACTTCTTGGCCAGAGGAATAAACTCTTCTGGGCCAGCAAACGAAGGGACACTTAGCAATGCTGTGGGTCTTGGGCTAAGATGAGCACCCAGGAGCAGCGATAGCATCCGAGCCCAGAGAAAATGTACCCTCAGCTTGAATTTTCTCCTCCACCCAAG
Seq C2 exon
GTCCTGAGTCCCCAGGAGTGAAATAATCAGTTGAAGGAGGAAGAAGTTACAGATTTGGTGGCAGCATTTTCTTGGGATATGCTTGGTTGAAGACAAGTTTCAGAACAGAAATTGAGAGCAGATCCACGAGACACATCAACGGTACCAGGTGTTTTCAGAGAACAGAAGAAAATGATCCAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010046:ENSBTAT00000017478:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development