BtaINT0165390 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038869 | ZNF383
Description
Bos taurus zinc finger protein 383 (ZNF383), mRNA. [Source:RefSeq mRNA;Acc:NM_001102232]
Coordinates
chr18:47513087-47513805:+
Coord C1 exon
chr18:47513087-47513116
Coord A exon
chr18:47513117-47513678
Coord C2 exon
chr18:47513679-47513805
Length
562 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACATGTGTTTATTGTTTCAGGGA
3' ss Score
9.83
Exon sequences
Seq C1 exon
CACCCTGTAATACTGAAAGCCATGGCCCAG
Seq A exon
GTAAGTTAGCTGAGGCTCCTTCTTACCTTCCTGACATTCAGTTCTTTCTAAGAAAAACAAACACAATTTTAAGGATATTTGAGCCCAATTTCTTACTTTGTAGGTAGCCCTTCCATCTCTTTCCTTTCTTTGCAATTTTTGTTGTTGTTAGAAAAGAAAAAAAAAAAAAAAGATTCATTTGTCTGCTATTTGGATTTTGCTGATTTTTTCTCTGGGGTATCATGTAAGTGTTTCCAGGGAATTAGTATGTAGGTCTTGATCAGATTCAGTTGGGGTTTTTTGGTCAGAAATATTTCCTAGGTGGTGATGTGTGATTCCATTAGGAGGTGTATTATTTCTGGTACTCTTTCCTTTTGTAATGTTAGCTACCAATGAGGATTATTGTCTAGATTCATTAATTCATTAGAGGTTGCAAAATGATATTTAAATTCTGTCATTCATTTTCCATAGATTAGGTAGCATACTGTGTTTAAAGTAAAATATCTCATCAACTCTTTGGTTACTAACATTTGTGAAATATTTCTTTTTGTTGCACAAATAATACATGTGTTTATTGTTTCAG
Seq C2 exon
GGATCAGTGGTGTTCAGTGATGTGTCTATAGACTTCTCTCAAGAGGAGTGGGAATTCCTGAACCCTGCTCAGAGGGACTTGTACAGAGATGTGATGTTGGAAAACTATAGCAATCTGGTGTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038869:ENSBTAT00000024544:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development