HsaINT0187059 @ hg19
Intron Retention
Gene
ENSG00000188283 | ZNF383
Description
zinc finger protein 383 [Source:HGNC Symbol;Acc:18609]
Coordinates
chr19:37721311-37726577:+
Coord C1 exon
chr19:37721311-37721364
Coord A exon
chr19:37721365-37726450
Coord C2 exon
chr19:37726451-37726577
Length
5086 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACGTATGTTTATTGTTTCAGGGA
3' ss Score
9.29
Exon sequences
Seq C1 exon
GAGAACGGCCTCAAGGAAGACTAACCATCTGCAATACTAGAAGCCATGGCTGAG
Seq A exon
GTGAGTTGATGCTTTTTCTTGCCTTCCTGACATTTAGTTTAAAAAAAAAAAAAAGACATGAGCATTTGCTTTCCTTATCCTGACATTTCTGGCTAACAGAGTTCCCCTTCAGAATCCTTGTCCCCATTTTTTCTTAGCTAGATAATCCTATACCATCTCTAAGTATCCCTTTTATTTTTATAAATCAACCAGCATTAATATTTTCATTCCGTAAATACCTGAGCATCTCTTTTTCTGAACTCTTTCCCAAGGACTATGATAGGGGATGAATTATCTCAAGGAAGCAAGAATAGATTTGTAAAATGAAGTTACCCTGTCTGGACCATTATTTGATGAGTTGAAGGTGTGAGTTACTTAGCTGGAAATATAGACAAGCCAAGATTATCTCTACAGAGTAGCATTCTCCAGTAAGATAGGATGAAGTGTGGTGCTGGTAGTTCCAAATGTTGGATTGTTGCAAGATCTGGTTTAGGCACCTTTGGGGATCATGGGGTTGGTGGCTGATACAGAGCTCTGCAACTCTGTAAGAACATCCTGGAGAGAAGTCCAATTTCAGGTTGGATAGGAAGTTTGGATTGTAAGGAATTTCTGTGAATCATTGAGTTTTCTGTATCTCAGAATTAAGGATAGTGATAATGGATGTTTACAATGGTTCAGCCAATGCATAAGTCATGTGGATCACACTGTCAGAGCTCAGAAGAACCTTTTAAGTCTTATCCAGTAATATCTGTATTGTAGAAAATTCTACCAGAAAAATAATTATTAAAGAATTTGTAAAACGCCAGGTGCAGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAAGCAGAGGCAGGCGGATCACCTGAGGTCAGGAGTTAGAGACTGGGCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAGAAAATTAGCCAGGTGTGGTGGCACATTCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCCTTGAACCTGGGAGGCAGAAATTGCAGTGAGCCAAGATCACACCACTGTACTCCAGCCTGAGCAACATCTCAAAAAAATAAAAATAAATAAAATAACTTTACATATAACTTTATATATCTTTTTCGTAGCTTTGATTGATGCTCTAAGATCACATGGGGGTAGTTTAGAATATATTAGATGAAGGACAGCTTTGGACATAACACAGACCAAGAGTTGAGAACTTTTGCATCAGGCACAAGCAAACTGATTATAGTTGTGTTATACCAGATCATGTAGCTGCTGTGTAACGTGACCTTAAATAGTCTTCCTGCATAGGACGAGCAAAAGGGGATGATTCATCAATAGGATAGAGATTTAAGACATTCTCTGGCTACCCCTTGCATTGTTAGGTGATGTCTTTTAGCAGAATTATGAAGACCTTTTTCTCCCTTAATAAAGGAGAAAAACTGATGGCCTGAGAAATCTTTCTCTGCTTTTCAATTTTATGAATTTTTTCAGAAGTTATAAGACTATTACTGAATTTTTACTTATTTGATAAACATTAACTATTTTTGTTTTGGTCAGATAAATTATTGACAAAACTAATTAGTATTTTTTTATAAGTAAAACATTTTCCTTTTTTCCTCAAAAAGGTTTTTTTGTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTCGCCTAGGCTAGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCTGCCTCAGCCTCTCGAGTAGCTGTGACCACAGGCCCCTGCCACCACGCCTGGCTAATTTTTTCGGTTTTAGTAGAGACTGGGTTTCATCATGTTGGCCAGACTGGTCTTGAACTCCTGACCTCGGGATCCACCCACCTTCGCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCCGGCCAAAAATGTTTTTTTCACGTAGGTCTATATAGCTAACTGGTAGACCAGAGAATTACCTCATCTTATTTTGGTTTTATACCAATAAAATATATCTTGGATACTCAATAAATAAATACTCAAAAAATAAAAAAATAAGGTCATGATGCATAATTTTATTAGGATGCACATCGTATCTGGTTCTCTTTCTTTTTGTAATATTACCAGTTATTGATAATTTTTAGATTCATTCACTAGGGGTTACAAGTGATCTTTTAATTCTGTCATTCTTCCTTCATAGATTAAGTGGAATACGTCTATCTATAAAGTAAAACTTTCCCTCATCAATTGTTTGGTTACCCTGAAGGACAGTTCATATAGGAAAGAAGAATGTTTGATTCTTTCCATTTAATTACCAGTTTTCCAAATAATGAGTTGGCTTCTTAGACTTGTCCAAAAGTGACCAATAATGTTTTAAAATAGTGTTGTGAACTCATGGATTAAACATTTTTAATATGATCAGTCCGTTGCAGTTGTCCATATAATTTGATGTGCAACCAATCCTAGTGAACACGTATTATTCTCTTTTATAATGCTATTGTATTATATTCTCTTATTTTTTTTTTAATCCTCTTGATTTCTCTGCAGAAAATAGGGAAATTCATCAAACACAATGGAAAGTTTCCTTGGAAGATTATTATCTAGTCACACTTGCATACAGTCCCCTCTTACAGCATTCTACAGTTTGGGATTTTGTTTGTTTGTTTATTTGTTTTTGTATTTATTTATTTATTTATTTATTTATTGAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGATATCTCAGCTCACTGCAAGCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCTTCAGCCTCCCGAGCAGCTGGGATTACAGGCGCGTGCCACCACGCCCAGCTAATTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCATGATCTGCCTGCCTTGGCCTCCCAAAGTTCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCTGTTTTTATTTTTTTTTTGGGATGGAGTCTTGCTCTCTTGCCCAGGCTGGAGTGCAGTGGTGCCATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTGCTGTCTCAGACTCCCGAGTAGCTGGGACTACAGGCGCACACCACCACAACTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGATGGTCAAACTGGTCTTGAACTCCTGACCTCGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACCAGTGTGAGCCACCACACCGGGCCTGGGATTTGTTTTTAATCCTATGGGAAATGTCCTAATAGGGCTTTGGCATATCTTTGTTCCAATTTCTACATTGAGGAGGGGAAGAAGCTTTCTTTTTATTAAATAAAATACACATCTTTTTATTTTTTTAAAATTTTATTTATTTATTTTTTCGAGACGGAGTTTCGCTTTTATCGCCCAGGCTGGAGTGCAATGGCGCAATCTCTGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGTCACCACGCCCAGCTAATTTTGTATTTTTAGTAAAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGATGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTAGAGGCATCAGCCACCACGCACGGCCCACATCTATTTTATTAAATAGGTGCCTCAAGCATTAGTTGCTAATGAAACAGAAATACAAATGAAACATCTAAATATCCAAATACCACATTTTCTCTAGATTTCCCCCAAAATGTGCCTCATCTCCCTGTACTTTTACATAATATTTCTAGTATCTTCATTTTGTTAGTTTTGCAATGTCACTGTCAAGATAGAATTATTTGATGGCTTAAGACAACTTTTATTTTATTTTATTTTATTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCAGTGCAAGCTCCGCCTCCCGGATTCACGCCACTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGGACTACAGGCGCCCGCCACCACGCCTGGCTAATTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGCGATCAGCCCGCCTTGGCCTCCCAAAATGCTGGGATTACAGGCATGAGCCACCACGCCCAGCCAACTTTTGTAAGATTTTCAAACTCTAAATTTATAAATCCTATTACAAAAAAAAATTATAATAATTTGACGTGCAAGTTGTAACAGTATTGGTCAGTGGGAGTATCTTCAAGTTGCCTCCTAGTCTTATCAGCATGATCCTAACAGTTTTTGGTTGCTTTCTTGCTTTTTGGTATAACAAGACGTTCAGACTCATCCTGTGCATTTTGTAAAAGTTGCTCTTGTGGATTTCGTGAAATCAGTTCTTTTCCCAAAGAACCTTGGTTTCTTTTATTTGAAAATGATATTTAGAAACCACAATCTAGGCTGGGTACAGTGGCTCATGTCGTAATCCCAGCACTTTGAGAGGCTGAGGCGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTTAAAATACAAAAATTAGCTAGGTGTGGTGGTGCGTGCCTGTAATCCCCGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCGGAGGTTGCGGTGAGCCGACATCATGCCACTGCACTCTAGTCTGGGTGACAAAAGCGAATTTCTGTCTCAAAAAAAAAAAAAAAGAAAAGAAATCACAATCTAGACTCTAGGGATGCTCGTTGCTACTGGATTAGTCATTATTTCTAGGCCGTTTCAATGGACAGAGTCAGGAATTTGTTTAATATAAACTTCCTACTCTTGCATCTATTTCTGAAATCTAAAGATACAGGTTCTCAGTGACACCAATATAATGACTCATTTTGTATTACCCCACAATACAAGCATCGTAGTCTCTGATACATTTTTTTAATTACACAAGTAATACGTATGTTTATTGTTTCAG
Seq C2 exon
GGATCAGTGATGTTCAGTGATGTGTCCATAGACTTCTCTCAGGAGGAGTGGGACTGCCTGGACCCTGTTCAGAGGGACTTATACAGAGATGTGATGTTGGAGAACTACGGCAATCTGGTTTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188283-ZNF383:NM_152604:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)