BtaINT0165472 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038050 | ZNF420
Description
zinc finger protein 420 [Source:HGNC Symbol;Acc:HGNC:20649]
Coordinates
chr18:47725266-47727252:-
Coord C1 exon
chr18:47726938-47727252
Coord A exon
chr18:47725317-47726937
Coord C2 exon
chr18:47725266-47725316
Length
1621 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TTTTCCCCCTCTGAGAGTAGCAC
3' ss Score
-0.24
Exon sequences
Seq C1 exon
GGCGCGGCATTTGGAGCTAACTGGTTCTAGCAGCAGTGGGGTCCACGAAGCCCGCCGGGAGTTGGTGAACTAGGTCTCCTAGCGTCCTGGCCGTCAGCCACAGCCTGCCCGGAGTTGGACTACATTTCCCAGAGCCACCGCGTCCCGAAGCGGCTTCATTTCCTTTTTTTTTTCGCGTGATTTGGGGACGTCGCATGGGGAGAGGGCTGCGTCCCTGGAGGAGTTTGGCCTGGCTCCCGCAGGGCGGGCGAACCCGAAACCGGGCAGGGACTCCGGGCACCAGATCCTGGGCCCTGAACTGCACCCTCTATCGAG
Seq A exon
GTATGTCCGGAACGCCAGGGCGGAAACGCTCCGATGAAGCGTCGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGGCAACCTGGTATTGGTTACCGTATCGGCGAATGGGCGTGTACTACTGTGGTTTTGTGTGTAAGCGTTTGTGTGAGTGTGAGTTGTTTGTGACTCTGAGGATGTGGTAGTTCTGCTTTGACTGTATTCCTGACCGCTTGCTTCCCTGAGTGGAAATGTGCTTATGTGACAGTATAATTGTGTGTGGACCGTTTGTTCAAGACTGCGGCTTGCGACAGTGTTGTTGTGACAGGCTGTTTGGAAGTGCTTGTGTTACTTTGAGGTTGTGTGTGTGTTACTGGGGTTTGCCTGTGACTTTGAGGTGTTATGATCGTGTTTCTGTAACACGATGTTTGTGATTGCCTGTTTCCTTGAACTGGTACTTGGTTGTGTTTTTCTGACTATCTGATTGAATGACTGTGAAAAGAGTAAAAGTGTTGTTGTGAAAGGTTATTTTGGGCTTTGTGTGTCCCCAGCAGGGTGCTTGTATGTGCTTGAGTGATGTGTATGTTCGGTGTAGGATTGGATTTTCAGACTAGATGGTCAAACAGTGAAGTGTTAACTTGGTGATTGTGACTGGCTGTGAGACTGTGGAAATGTGATCGTGTGCGACTCTGTAAGTCATTTGTATGTTTCATAGCCTGTGACCTTATGGAAGTTTATCTGGATACAGAGGTAAAATTGCATCTTGGTATTTCTGGATTCATTCTGGGGCTGAGTCTGCCTGTGGATCAAGAATCCCATGTGGGTACCTCCCTGGTGATCCAGTAGCTAAGATGCCCTGCTTCGGATCCAGGGGGCCTGGGTTCCATCCCTGGTTTGGGAATTAGATCCCACATGCTGCAACTAAAGATCCTTCATGCTGCAACTAAGATCTGGAACAGCCAAATAAATAAATATTACAAAAAAAAAAAAAACACAAAGAATCCCATGTGGTCCTCTGAGGATGACTTCTTTCTCTTTTGATCACAGTGATTCATTTCCCCTCTTTTCACACATTGGCTGTGGTGCTTCATTTTTCATATTTATCCTTAGTTTGCTGTGGAATTTAAGATGTAACTTCCCTACTGCTTGCTGGTGCCCTCTCACCTTATAACCTTCAGGGTTTTGAATGCAGAAAAGTGACAGGAAGGAATAAGTCAGAAATTTGAACTCCTGATTCAAGAATATTAGTTATTTCTAAAGCACAGATTTTTGAGATGAGAATTTTAGAACTGATGGCACCTTCAAGACAGGTCACTGGGAAATGTAATGGAATTCCAGGAGTGGAAATACTTCCAGAGAGTGTTCTAGAAGAGTCAGTGAGAGACTTGGGAAATTGTATACTCCACTGCAGCTTGTCTCCAACAGACAGCTTTGAATTCAGAAACAGATTCTAGCCCAAGATGGCTGTGATCTTGGCCCTTCTTTCTAATACAGAAAGTGCAGAACTGTTCTAGTTTCCTTCTGATTTTCCTCTGTATTAAATGAGGGGTAGATTAATGGGGTGGGGGTTCTAATTTAGAGTATACCTTCAGAAAGGGCCAGTATCTCATGGTTCTTTTTTTTTCCCCCTCTGAGAGTAG
Seq C2 exon
CACCCAGAGGAAGGAAGAATGACTGTTGTACAGTCAGAAGCAAGCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038050:ENSBTAT00000054598:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCATTTGGAGCTAACTGGT
R:
AGCTTGCTTCTGACTGTACAACA
Band lengths:
357-1978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development