HsaINT0187185 @ hg38
Intron Retention
Gene
ENSG00000197050 | ZNF420
Description
zinc finger protein 420 [Source:HGNC Symbol;Acc:HGNC:20649]
Coordinates
chr19:37078480-37080388:+
Coord C1 exon
chr19:37078480-37078570
Coord A exon
chr19:37078571-37080344
Coord C2 exon
chr19:37080345-37080388
Length
1774 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TTTTCTTTTTCTGAGAGTAGAGC
3' ss Score
-0.38
Exon sequences
Seq C1 exon
CTTGGCTCCGCACCTGCTGGGCTGGCGAACCCGAAATTGGGCTTGGAACCCGGGAGCCAGATCTTGGACCCTGAACTGCACCTCTGTCAAG
Seq A exon
GTAGGAGTGTCCGGGATGCCGGAGCGGACACGCGCGGAGAAAGCGTCGCTGGGGTTACTCGTGTGGCCGTGTCTCCGGTTTTGTGTGCAGGCTACAGCCTGCCTGGTATTGGCGACTGCCTGTGCATACACGACTGGACGTGTGTGGCTGTGGTTTTGTGTATGAGCATTTGTATGAGTGTGAGTTGTGACTCTGAGGGTGTTTGTGACTGTTTGCTTACCTGGCTGGGATATACTTATGTGACTGTGATTTTATGTGTGCCGCGTGTATAATTGGGGTTTGCCTGTGACTATGAAGTGTGTGACAGTTGTGACAAGAGTGTTTGGATGTTCTTGTGTCACTTTGAGGTTGTGTGTAAACCTGATATCGTGGGATGGATTTGCCAGTAAATTTAAGGTGTGTGACAGTGTTGCTGTGACACGGTGTTTATTACCGCGTGTTTCCCTGATTTCGTACTGGGTTGGGTGACTGTCTGATTGTGTGTGACTGTGGGGTTGTGTGTGCTGTTTTCATGACTGTGTAAAGAGACTAAAATTGCAGCTTTGAAAGGGTGTTTTTGGCGGTATGTGTCTCTGACAAGGTGCTTGGATGTAATTATATGCCTTGTACTTAATGGGATTTTGTTTGAGACAAGGTGGTCTAACAATGTAGCATAATTGGGTGATTGTGCCTCTAGCTGTGTAACTGTGGAAATGTGATTATGTGTGACTTTATGTGGCCATTTGTATATTCTGTGACCTTATGGGGGTTTAGTCCAGTACAGAAGTAAATTTCTTTTTGGTATTTCTGGGGTTCATTTGGGGCTGAGGTCTGCCTATGGATTGTGAGTCCCATGTGGCTCTGTGCTCCTCCCATGTGGCTCTGAGGACTTAAGGACTTTTTGATTTGACCACAGTGGCTGCCCTTTCATCCATGGCCTGTATTGCTTCATTTCTGTATCCATCCTCGGTTCACCTTGGGAAATGTAGTTACTTACGAGTTCACGACTTCTTCCCTGCGTCCTCTTGCCTTATAGCCTTAAGGGGATTGGGTGCAGGGAAGTGGCAAGAAGTAAGGAAGTCAGACATTTGGACACCTGAGTGATGAATAGGAGTTATTTGCAAGTTACAGACCTGGTCTTAGGATGAGAATTTTAGGGCTGATAATACCTTCAAGACAGCCACTGGATGCTGTGCGCGGTGGCTCACATCTGTAATCCCAGCGCTTTGGGAGGCAGAGGCGGGTGGATTACCTGAGGTCATGGTTTCACCATGACCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCAAGCCACTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCATTCTCTAAATAAATAAATAAATAGGCCACTGGAAATATAATGGGACTCCAGGAGTGGGAATAGTTTCAGAGGGAGTGCTTTAGGAGACAGCCACCCAGTTCTGAACCTGAAGCACCCCACTGCAGGACTGTCTCCAGTGTACAGCTTTGAATACAGAAATAAATTCAAGCCCAAGACAGCTGTGACCTGGCCCTTCTTTCTGATACAGAAGGTAGAAGACTTATTCTAGTCTCCTCCTGACTTTTCTTTATGTTAAATGAGATTAAGAGGATGGAGGAAGAGGGTATGTTATAATTTAGCATATTCCCCAAGAAAGGCCTAATATCTCATTCCATTTTTCTTTTTCTGAGAGTAG
Seq C2 exon
AGCCCAGAGGAGAAAGAATGGCTGTTTCAGTAGCAATGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197050:ENST00000337995:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains