BtaINT0165513 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038534 | ZNF446
Description
zinc finger protein 446 [Source:HGNC Symbol;Acc:HGNC:21036]
Coordinates
chr18:65909693-65909995:+
Coord C1 exon
chr18:65909693-65909840
Coord A exon
chr18:65909841-65909905
Coord C2 exon
chr18:65909906-65909995
Length
65 bp
Sequences
Splice sites
5' ss Seq
CTGCCCCCC
5' ss Score
-22.83
3' ss Seq
GGGCCCCCCACCTCAAGCAGGGT
3' ss Score
2.5
Exon sequences
Seq C1 exon
GAGTGGGGGCTCCTGGAACCATCCCAGAAGGAGCTGTACTGGGACGCGATGCTGGAGAAGTACGGCACGGTGGTTTCCCTGGGTGAGGACCCCTCTCCTTGTCCGGGCCCTTGGGCGCACCTTGCCTCCCAGCGCTTCCCAAGGGCTG
Seq A exon
CCCCCCCGCCCCCGGCCCTTCATTCGTGCGAACCCCTCACCTGATGGGCCCCCCACCTCAAGCAG
Seq C2 exon
GGTTGCCGCACCCCCTGCCTGAGTCCCGCGCGGAGTCTCAGCCGGAGGTGCTGAGCACCGGATCCGAGGGGCGGAGACGCCTCCGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038534:ENSBTAT00000056703:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.740 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(87.1=54.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGGAGCTGTACTGGGA
R:
CACCTCCGGCTGAGACTCC
Band lengths:
175-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development