BtaINT0165514 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038534 | ZNF446
Description
zinc finger protein 446 [Source:HGNC Symbol;Acc:HGNC:21036]
Coordinates
chr18:65909906-65910529:+
Coord C1 exon
chr18:65909906-65909995
Coord A exon
chr18:65909996-65910131
Coord C2 exon
chr18:65910132-65910529
Length
136 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CTGGGCCCCCAGGTTACCAGGCC
3' ss Score
-1.75
Exon sequences
Seq C1 exon
GGTTGCCGCACCCCCTGCCTGAGTCCCGCGCGGAGTCTCAGCCGGAGGTGCTGAGCACCGGATCCGAGGGGCGGAGACGCCTCCGCCCGG
Seq A exon
GTGAGTGGCCTCTCAAGGTCCCTCGGTGGGGGTTGGGGTGCAGGTGCGGGTGGGGCAGGGGCGGGGGTGGAGAATGGGGGCGGGCGGGGTGCCCAGGAGGCCTCGGCTGGACAGTGCTGGGCCCCCAGGTTACCAG
Seq C2 exon
GCCTCCTTCACTCCCCAGGAGATGAGAGCGAGGGACGGCCCGGTGGCCCCGAGGCCCCGCCACCACCGCCGCCGCCGAGGAGCAAGCCCTACACGTGCACTCAGTGCGGCGGCGCCTTCGACTGGAAGTCGGTGTTCGTCATCCACCGCCGCGCGCACGCCGGCGGCCCGTGCACGGAGAAGCCACCGGCCGGCCCGCCCCAACGCGCGCTCCCGGGCCCGCGCGGCTACGCCTGTGAGGAGTGCGGCCACAGCTTCAGCTGGAAGTCGCAGCTGGTCATCCACCGCAAGGGCCACGCCGGCCAGCGGCGCCACCTCTGTGCTGACTGCGGCCACAGCTTCGACTGGAAGTCCCAGCTGGTCATCCACCGCAAGAGTCACCGGCCCGAGGCCCCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038534:ENSBTAT00000056703:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=17.3),PF0009621=zf-C2H2=WD(100=17.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGTCTCAGCCGGAG
R:
GGTGGCTTCTCCGTGCAC
Band lengths:
248-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development