BtaINT0165521 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026263 | ZNF45
Description
Bos taurus zinc finger protein 45 (ZNF45), mRNA. [Source:RefSeq mRNA;Acc:NM_001076213]
Coordinates
chr18:52438361-52440353:+
Coord C1 exon
chr18:52438361-52438418
Coord A exon
chr18:52438419-52440226
Coord C2 exon
chr18:52440227-52440353
Length
1808 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GAGTGTGATTGATGTTGTAGGAG
3' ss Score
4.31
Exon sequences
Seq C1 exon
GCCTTCCCAAGACTCAGCAGTTCCCCAGAAGGAAGAGGAAAAAATGTCCAAGTTCAAG
Seq A exon
GTGAGTTCGGCTTGCCTTTCTAGGCATTCAGTTGTCACCTCATTTCTCAGCAATTAAACACATCCTGTTTCTCTTTCTTGGGAAGCCCTGAAGTGAACAGTTGAAGTGAACAGTAGGCATCTGAGAACCTCTTCCAAGAAGAGTGCCAGATGATCACTGGTTTTTAATTTTAGTATAGTTTCATTTTTGTTGTTTTATCACTTTTTTGTAATTTCATATCAGAGTAGAATAGAAGATGTTAAAATAATGCTGTATACAAGTGATTCTTCAGAGAAGGCAGTGGCACCCCACTCCAGTACTTTTGCCTGGAGAATCTCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTTAGAGTCAGACACGACTGAGCAACTTCACTTTCACGTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAACCCCAGGGACAGGGGAGCCTGGTGGGCTCCTGTCTATGGGGTCACACAGAGTCGGACACGACTGAAGTGACTTAGCAGCAGCAGCAGCACAAGTGATTCCTAGTCATGAGCGATTGTGCCCTCAGGCCATGTCTGAAAACATTTTTGCTGTCTGACTTGGGGGATATTACTGATACAGTACATAAGAGCCAGGGACGCTGCTAAATACTCTGCAGTGCACGCAGCAGCCCCCTTCAACAAAGAATCATCTGGCCTCAAATGTCAGAAGTGCCAAGGCTGTGAAACCATACTGTCCCCAGTGCTGTACAAGAACAGTAGCCAAATGTAGGTGAAAATATGTGTAATCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGAACCGCAGCATGCCAGGCCTCCCTGTCCATCACCATGCTCAAAAAACCAAAGCTTGAAATCTGTAATAGGAATTTTACAGAATCCTAATATAAAACCCCAGTTGGAGTATGTGCAAAGAATATTAACAGGTGGGACTTCCCTGGAGGTCCAGTGTTAAATATTCTGTGCTTCCACTACAGAGGGGTGTGCCTTCAGTCCCTGGTTGGGGAACTAAGATCCCACGTGCCATGTGGTATGGCCAAGGTAATTAAAAAAAAAATATATATATATATATATTGGCCATGTCCTGCCTGCCATGGGACACACACAGTAGGATTTGCTCCAGGACCTTGCTTCAGACAAGGAAGCTACTCCTCTATGAATCCACTGATACCTCTGTTGCTGAAAAAAAATAAAAATTAAAAAAAAAAAGAATATTAACAGGCCAAGTTCTGAAGAAAAAAATAAAAACACCTAGTAAATATGTGAAAATATGATAAGCTAATTAATGATCAAATAAGTGCAAATAATCAAATTAGTTGTTCTTTTACTAAGTTTGCCTAGGATTTAAAAATATGGTTATATTCCAAGTGTGGGATATGGAGAATTGGGGCTACTTATATACTCTTGGAGGAGGATAAAATAAGGGAAAAGTTGAGAAGAAAATCTGCTGTTGTACATAACAATTTTGAAGCTGCCTATTCTTTGACATGGTAATTTTTCACTGTTTGGAACTTATCCTAAAGAAATAATCAGAAGGAAAGCAAAACAATCTATATGAAAAGTTGTTCTTTTCAGCATTTATTATAAAAAGAAAAATATATACAACATAAATGCGTTATTGGGGACGTTTAATTATGTTACAGTAAAATTGACTCTGGTCTCTCAGCACCTGGAACCACTTTATACACATCCTGCCCACTTTTCTCAGTTGTTACCCTTCCTCCAGGGAGAATCAGGAGTGTGATTGATGTTGTAG
Seq C2 exon
GAGGCAGTGACCTTCAAGGATGTGGCCGTGGTCTTCACAGAGGAGGAGATGGGGCTGCTGGACTTGGCCCAGAGGAAGCTGTACCAGGAAGTGATGCTGGAGAACTTCCGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026263:ENSBTAT00000043746:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCAAGACTCAGCAGTT
R:
ACTGAGAGCAGGTTCCGGAAG
Band lengths:
182-1990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development