RnoINT0168464 @ rn6
Intron Retention
Gene
ENSRNOG00000019416 | Zfp61
Description
zinc finger protein 61 [Source:RGD Symbol;Acc:1563843]
Coordinates
chr1:81126009-81127059:-
Coord C1 exon
chr1:81127045-81127059
Coord A exon
chr1:81126136-81127044
Coord C2 exon
chr1:81126009-81126135
Length
909 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GTCATATGTGCTTGTTGTAGGAG
3' ss Score
7.32
Exon sequences
Seq C1 exon
ATGAGTGCGCCCATG
Seq A exon
GTAAGTAGAGCTCACCGTCCTCCCTGTCAGAATGTAATGGTTCTTCTCAAGCTAGAGGATTTTTCTCTTGTTAGGAGACTCAAAGCATTTGCAAGCAGACAAGATGGCTCAGGGGTTAAGGTCTATGCCTCCAGGCCGGATGACCTAAGTTTGATCCCCAAGATCTACATGGTGGAAGGAGAGAACCAGTTTCCACAAGTAGTCATCTGTCTTTCACACAGTACTATCATACACACACACACACACACACACACACACACACACACACACACACAACACACACACACACAATGAGTAAATGTAATTTTAAAACTAGAATGTGTAAAAGTACGTGAGGTCTTTAGGCTCTGCCAGGTGCTTGTTTGTCACTGTAAGTTTAACTGTCCCAGAGCTATTGCGCCTGTAAGCAGGTATTGTTGTTGATCCTTCTCTTAGGGAGACAGAGACAGACATCTGTTTACCCCAAGTAGGGAATCCACAACAGACTCAAGTAACAATATGACCCAAGTCCAAGTTGAGGAATTGGTGAGTTTATTGGGGTTACTCCCGGGAACAGAATGACTCCAAGGTATCTGCATCATGGAAAGGTTTCCCTAGAATTTTATGCACGACTTGCAGACATCTCAATAGGTAGGAGAGGCTGTTCTAGGAAACTCTGTTGACCGGAGTCCCCTCAGCAGTTCCTATTGCTCATATAACTCTATGGCCAGAGGGACCTTGGACATTGGTCAGTTTCAGGGAGTTCCCGTGACTTATGAGTTGTATAATTCCATAATCTCAAGGAACCTCCTTTTAGAACTTCTGAGTCTTTATAAGCTTCCTCCCCCTCGTCCCCAAGACTATTTTAAGTCTGACAGTGTCACTAACAGTAGTTATTTATAAGATTGAGGTCATATGTGCTTGTTGTAG
Seq C2 exon
GAGGCAGTAACATTCAAGGATGTGGCTGTGATCTTCACTAAGGAGGAGTTCAGGCTGCTGGACTCCACCCAGAGGAAGCTGTACCAAGATGTGATGGTGGAGAATTTTCGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019416:ENSRNOT00000026252:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]