BtaINT0165066 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027431 | ZNF226
Description
Bos taurus zinc finger protein 226 (ZNF226), mRNA. [Source:RefSeq mRNA;Acc:NM_001102350]
Coordinates
chr18:52477750-52480894:+
Coord C1 exon
chr18:52477750-52477795
Coord A exon
chr18:52477796-52480767
Coord C2 exon
chr18:52480768-52480894
Length
2972 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GCTGGTATTGTTTGTTGTAGGAG
3' ss Score
6.72
Exon sequences
Seq C1 exon
GACTCTGCACTTCCCTGGAAGGAGAGAGAAGATGAACATGTTCATG
Seq A exon
GTGAGTAGAGCTTGTTTCTCTTGCTGTTAAAAAATACCATTTTTGTACTCAGAGATTTTACGTGGATTTTTCTTTCTTTGTTTTTAATTGAAGTATAGCTTCCCTGATAGCTCAGTTGGTAAAGAATCCGCCTGCAATGCAGGAGACCCCGGTTCAATTCCTGGGTCTGGAAGATCTGCTGGAGAAGGAATAGGCTACCCACTCCAGTGTTCTTGGGCTTCCCTTGTGGCTCAGCTGGTAAAGAATCCACCTGCAATGCGGGAAACCTGGGTTCAGTCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGAAAGGCTATCCACTCTACTATTCTGGCCTGGAGAAGTCCATGGACTGTATAGTCCATGGAGTCGCAAAGAGTCGGACATGACTGCGTGACTTTCACTTTCACTTTTCACTTTCATAGTTGATTTACAATGTTGTGTTAGTTTCAGGTACAGCAAAATGATTCAGTTATATATATGTGTATGTATATATATGTTCAGATTCTTTTCCCTTACAAGGAAATATTCTGTAATAACAAAATACTGACTGTAGTTCCCTGTGGGTTTTTCTTTTTCAAGGAGAGTCTAAGCCTGTGAAGACCTTTGTGAGCCATGTGTGCTTTTTAAAAAATTCCTGTCTTATGTAATTAGTTTTGGTTTTAATTTTGGTTTTATTTCGTCATTTTTTATTTCACAAGTAAAAGAAAAATTAAGGGACATGAAGAACATCTTCCACTTTAATATTTCCCAGCTTACAAATTACCTGCTTTTATATTTCTGTAATCTCTTCATCATATGTATTCATAGCTGTGTATTTGTATTTATAACATAGAAGTAGTTGTATTAGTCGCTCAGTCATGTCTGATTCTTGGTGACCCCACAGACTGTAGCCTGCCAGGCCCCTCTGTCCATGGATTCTCTGGGCAAGAATACTGGAGTGGGTAGCCTTTCCTTTTGCCAAAGGATCTTTCCAACCCAGGAATCGAACCTGGGTCTCTTGCATTGCAGGCAGATTGTTCACCATCTGAGCTACAGGGAAACTCATTTATAAAATAAATACAGTTTAAAAACTTTTCTCATTTAATACTACCTAACATTTGCTTTTAATTGCTTTATCATGTTCCCAAAACTTCAGTCATGTCTGTCGTGTCTGACTCTTTGCAACCCCATGGACTACAGGATGCCAGGCTTCCCTGTCCATCACTAACACCTGGAGCTTGCTCAGACTCATGTCCATCGAGTTGGTGATGCCATCAACCATCTCCTCCTCTGTGGTCCCCTTCTCCTCCCGCCTTCAGTCTTTCCTAGCATCAGGGTCTTGCCCAGTGAATGAGTTCTTCACATCAGGTGGCCATAGTATTGGAGCTTCAGCTTCAGCATCAATTCTTCCAATGAATATTCAGGACTGATTTCCTTTAGGATTGACTGGTTGGATCTCCTTGCAGACCAAAGGACTCTCAAGAGCCTTCTTCCAGCACCACAGTTCAAAAGCATCAATTCTTTGATGCTTAGCTTTCTTACATACCCAGTTTTACACTATTTTTTATTCATAGACCTTTAGGACTTTTACTGTTTTAAGAATGCTACAGTGACAATGTTCCTGATTTAACTTTTTTCTCAAAAAATGTATTCTGAAAAATATTGCCTCTTTTTGCCCTTGACATACTAGATATGCAAAATTGAAGTGGTATATTTTGTAAGTGGTGCCTTGGATGTTTTTTGGTAAAATAGCCAAATATGGCACAGCAGGGTCAAACTGCCTCTTCACACAGAGAAAATAACTATTGGTAGTTTTCTTATGACAAGAGTGAGATTCTGTCTTCCTGTGGTTGAATCAGACCCTGTGTGTATTTTATTTACTGGTTTGTTTGTTTATCCATCTTGTACTGGGTTGGCCAAAAAGTTTGTTCAGATATTTCTGTATGGTGGTATGGAAAAGCTGGAATGAACCTTTTGGCTAACCCAGTATTTTTTTTTATTTTGATCAAAATAATCCATGACCTTAATTTTAAAAGTCAGGTGGTACTTCACTTGTCACTGCATTGACACCTGAGAACAATTGTCTAAAGAGGTACATACTTGGTTTTATCTTGGTTTTAAGTAAAAGGGTTGTGAAAAATGAGGAACCAATTCAGATTTATCCAGAAAACCAAGATTCTGGAGTCAGAATATACCATTAGATAAGAGAAAGACAAATAGAGAAAGAAAGAAGGGTTTCATCTGAGGCCTGGCATGGCCTTTTGGTTAATTCCCTCATATGACCCTCTTCCTCACCTGGTTCCTACTTCAGTGAGAAGCAGGCATCATATACTGCCAGACCTAAATTAGTAAATGTTTCTGGGACAATTGACGATTGTAACTAAAAAGTGAAATGTTTTGGGGAGTTCCTTTTATGGCTCAGCTGGTAAAGAATCCACCTACAATGCAGAAGACCTGGGTTCAATCCCTGGGTTGTGAAGATCCCCTGAAGAAGGGAAAGGCTACCCACTCCAGTATTCTGGCCTAGAGAGTTTCATGGACTGTATAGTCCATGGGGTCGCAAAGAGTCAGACACAACTTAGTGACTTTCACTTGGTAGTCCAGTGGTTAAGACTCTGCACTTCCACTGCCAAGGCCCGGGTTCAATCCCTGGTCAGGAAACTTAAGATCCCACAAGCTGCAAGGCATGGCCAGAAATAAAAAGTGAAGGCTTTTTAGTTCAGGATGCAGCAGTTAGAATTCTAGGGAGTTTATTTATGAGTTCACTGAGAACACCAGGTAAATACACAAACCTTCCTTCTTCATAGCTGCACTTGCGGTGAGGCTAAGGAAAGTCAGTGTGATGTTGGCAGGATGGAAGGAGCGGGGCTGCGAAGTCTACACGTTGCACAGGAGCCAGGGCAACTTCTCATCATCCTCCTCTCCTTCCTGGTGCTGCCCCCTTCCACTGGACACTGGCTATAAGACTGAGCTGGTATTGTTTGTTGTAG
Seq C2 exon
GAGGCAGTGACCTTCAAGGACGTGGCTGTGGCCTTCACAGAGGAGGAGCTGGGGTTACTGGACTCAGCCCAGAGAAAGCTGTACCAGGATGTGATGGTGGAGAACTTCCGGAACCTGGTCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027431:ENSBTAT00000037250:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development