HsaINT0186499 @ hg19
Intron Retention
Gene
ENSG00000167380 | ZNF226
Description
zinc finger protein 226 [Source:HGNC Symbol;Acc:13019]
Coordinates
chr19:44674188-44676367:+
Coord C1 exon
chr19:44674188-44674248
Coord A exon
chr19:44674249-44676240
Coord C2 exon
chr19:44676241-44676367
Length
1992 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTCATTTGTTTTTGTCGTAGGAA
3' ss Score
8.2
Exon sequences
Seq C1 exon
TTCAGCTTCTTAGGACTCTGCACTTCCCCAGAAGGAAGAATTAAAAATGAATATGTTCAAG
Seq A exon
GTGAGTAGAGCTTGCCTTTCCCAGCTGTTAAAAATACCATTTTAGTACTCAGAGATGGAACCAGGTTTTTCTTTTTCAAGTAAGAGTCAAGGCATCTGATGACCTGTTGAGTGTGCTAGGTGCTTATTTTGTTCCGTTTGAGTTTAGCTGGTTTTGGTTTTAGTTTTATTTCGTCATTTTTATTTTACAAATAAAGGTAGAAAAATTAATAGAAATGATGGGTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGGGGTGGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTTTACTAAAAATACAAAAATTAGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGAAACCCCATCTCTACTAAAAATACAAAAAATGAGCCAGGCGTGGTTGCAGGCACCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATGGCCTGAACCTGGGAGGCGGAGCTTGCAGTGAGCAGAGATCGTACCACTGCACTCCAGCCAGGGTGACAGAGCGAGACTCCGTCTCAAAAAAATAAATAAATAAAAAATAAAAAAATTAGCCAGGTATGGCGGTGCACACTTGTAATCCCAGCTACTCAGTTGGCTGAGGCAAGAGAATCACTTAAATTTGGAAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTACTCCAGCCTGGGCAATAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAATTAATAGAAATGAAAAAATCTTATTTCCATAATCTCTTCATTGTATGTACTTGTAATTATATATTGGCATTCATAACATAGATATAATTTTACATTTCTTACATTTATAACATTTATTTTTGTTGTATTTCTATCAAATTTATGTATCCAGTTTTTAAACTATTCTCTATATACAGTTAGTGTAGGATTTTTACTGTTTTAGGAACTACAGTGTTAGTTTTCTTGCATTTAACTTTTTCTGAAAAAATCAATTTTGAAAAATACTGCCTTTTAAAATCCGTAACATTAGGTATTCAGAATTGAAAAGGTATGTTTTGTGTGTGGTACTTCAGATTTTTTTTGATAGAATATTCAAATATGGCACAGTGTGTCAAGATTTAACAGCTGCTTCACCCAGAAAAAATATTAGACTTTTTTTTACTACAAGAGCTAGATTCTGTCTTCCCCATGCCTCAGTCATACCCTGTGTGTTTACTGGTCTTTTTCCCTTTTAATATTTTTTTTAGTTAAAGTAGTATGTGACCTTAATTTAAAATGCCTAGTGGTAGGAAAGGATTTGCCAAGCACTTACACTCTGCCCCTGTATTGAGACCTCACAGCAACTATGAAGAGGTTCTTTGTTTTGTCTCCATTTTAAACATAAATAGAAAAGGGCTTGTGAAAAATGAGGAACGTGCTCAAGTTCACATGGAAAACTAAAGATCCGGGATCAGTGTATTATATTCAAGTGAAAGACCAAGACAGGAGGACAGAGAGAGTCCTTCATTCAGAAACCTGACATGCCCTTTAGGTTTGTTTCCACATATAACGCTGCTCACTTGGCTCCCACCTCAGTAGGAAGGCAGGTGCTATCAAACACTATTGGGACTCAATTGGTAAACCTTTCTGGGGAAATTGGCAATGTTTTAGGTTCAGCAGGTAACAGTTCCAGGAAATTCCCTTATAAGAGTACTCACTGAGAGCATCCAGTAAATATACAAAGCTTTCTTTTTCACAGCAGCACTTTTGGTAAGTCAGTGTATGGCATTGGCAAGACAGGAGAAGGGCTGGGAAATCTACAAACGGCTGGGCATCCAGAACAACTTTCCACCTGTTCTCAGTGTTACCCATCTTCTAGTGGACATTGGTTGTAAGATTGAGGTCATTTGTTTTTGTCGTAG
Seq C2 exon
GAAGCAGTGACCTTCAAGGACGTGGCTGTGGCCTTCACGGAGGAGGAATTGGGGCTGCTGGGCCCTGCCCAGAGGAAGCTGTACCGAGATGTGATGGTGGAGAACTTTAGGAACCTGCTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167380-ZNF226:NM_001032373:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTTCTTAGGACTCTGCACT
R:
CCACTGACAGCAGGTTCCTAA
Band lengths:
187-2179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)