HsaINT0186499 @ hg38
Intron Retention
Gene
ENSG00000167380 | ZNF226
Description
zinc finger protein 226 [Source:HGNC Symbol;Acc:HGNC:13019]
Coordinates
chr19:44170035-44172214:+
Coord C1 exon
chr19:44170035-44170095
Coord A exon
chr19:44170096-44172087
Coord C2 exon
chr19:44172088-44172214
Length
1992 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTCATTTGTTTTTGTCGTAGGAA
3' ss Score
8.2
Exon sequences
Seq C1 exon
TTCAGCTTCTTAGGACTCTGCACTTCCCCAGAAGGAAGAATTAAAAATGAATATGTTCAAG
Seq A exon
GTGAGTAGAGCTTGCCTTTCCCAGCTGTTAAAAATACCATTTTAGTACTCAGAGATGGAACCAGGTTTTTCTTTTTCAAGTAAGAGTCAAGGCATCTGATGACCTGTTGAGTGTGCTAGGTGCTTATTTTGTTCCGTTTGAGTTTAGCTGGTTTTGGTTTTAGTTTTATTTCGTCATTTTTATTTTACAAATAAAGGTAGAAAAATTAATAGAAATGATGGGTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGGGGTGGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTTTACTAAAAATACAAAAATTAGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGAAACCCCATCTCTACTAAAAATACAAAAAATGAGCCAGGCGTGGTTGCAGGCACCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATGGCCTGAACCTGGGAGGCGGAGCTTGCAGTGAGCAGAGATCGTACCACTGCACTCCAGCCAGGGTGACAGAGCGAGACTCCGTCTCAAAAAAATAAATAAATAAAAAATAAAAAAATTAGCCAGGTATGGCGGTGCACACTTGTAATCCCAGCTACTCAGTTGGCTGAGGCAAGAGAATCACTTAAATTTGGAAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTACTCCAGCCTGGGCAATAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAATTAATAGAAATGAAAAAATCTTATTTCCATAATCTCTTCATTGTATGTACTTGTAATTATATATTGGCATTCATAACATAGATATAATTTTACATTTCTTACATTTATAACATTTATTTTTGTTGTATTTCTATCAAATTTATGTATCCAGTTTTTAAACTATTCTCTATATACAGTTAGTGTAGGATTTTTACTGTTTTAGGAACTACAGTGTTAGTTTTCTTGCATTTAACTTTTTCTGAAAAAATCAATTTTGAAAAATACTGCCTTTTAAAATCCGTAACATTAGGTATTCAGAATTGAAAAGGTATGTTTTGTGTGTGGTACTTCAGATTTTTTTTGATAGAATATTCAAATATGGCACAGTGTGTCAAGATTTAACAGCTGCTTCACCCAGAAAAAATATTAGACTTTTTTTTACTACAAGAGCTAGATTCTGTCTTCCCCATGCCTCAGTCATACCCTGTGTGTTTACTGGTCTTTTTCCCTTTTAATATTTTTTTTAGTTAAAGTAGTATGTGACCTTAATTTAAAATGCCTAGTGGTAGGAAAGGATTTGCCAAGCACTTACACTCTGCCCCTGTATTGAGACCTCACAGCAACTATGAAGAGGTTCTTTGTTTTGTCTCCATTTTAAACATAAATAGAAAAGGGCTTGTGAAAAATGAGGAACGTGCTCAAGTTCACATGGAAAACTAAAGATCCGGGATCAGTGTATTATATTCAAGTGAAAGACCAAGACAGGAGGACAGAGAGAGTCCTTCATTCAGAAACCTGACATGCCCTTTAGGTTTGTTTCCACATATAACGCTGCTCACTTGGCTCCCACCTCAGTAGGAAGGCAGGTGCTATCAAACACTATTGGGACTCAATTGGTAAACCTTTCTGGGGAAATTGGCAATGTTTTAGGTTCAGCAGGTAACAGTTCCAGGAAATTCCCTTATAAGAGTACTCACTGAGAGCATCCAGTAAATATACAAAGCTTTCTTTTTCACAGCAGCACTTTTGGTAAGTCAGTGTATGGCATTGGCAAGACAGGAGAAGGGCTGGGAAATCTACAAACGGCTGGGCATCCAGAACAACTTTCCACCTGTTCTCAGTGTTACCCATCTTCTAGTGGACATTGGTTGTAAGATTGAGGTCATTTGTTTTTGTCGTAG
Seq C2 exon
GAAGCAGTGACCTTCAAGGACGTGGCTGTGGCCTTCACGGAGGAGGAATTGGGGCTGCTGGGCCCTGCCCAGAGGAAGCTGTACCGAGATGTGATGGTGGAGAACTTTAGGAACCTGCTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167380:ENST00000454662:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTTCTTAGGACTCTGCACT
R:
CCACTGACAGCAGGTTCCTAA
Band lengths:
187-2179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains