RnoEX0101567 @ rn6
Exon Skipping
Gene
ENSRNOG00000019416 | Zfp61
Description
zinc finger protein 61 [Source:RGD Symbol;Acc:1563843]
Coordinates
chr1:81126009-81127059:-
Coord C1 exon
chr1:81127045-81127059
Coord A exon
chr1:81126520-81126609
Coord C2 exon
chr1:81126009-81126135
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGATCCTTCTCTTAGGGA
3' ss Score
7.64
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATGAGTGCGCCCATG
Seq A exon
GGAGACAGAGACAGACATCTGTTTACCCCAAGTAGGGAATCCACAACAGACTCAAGTAACAATATGACCCAAGTCCAAGTTGAGGAATTG
Seq C2 exon
GAGGCAGTAACATTCAAGGATGTGGCTGTGATCTTCACTAAGGAGGAGTTCAGGCTGCTGGACTCCACCCAGAGGAAGCTGTACCAAGATGTGATGGTGGAGAATTTTCGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019416_MULTIEX1-8/11=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.900 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSRNOT00000026252fB16977
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]