RnoEX0101566 @ rn6
Exon Skipping
Gene
ENSRNOG00000019416 | Zfp61
Description
zinc finger protein 61 [Source:RGD Symbol;Acc:1563843]
Coordinates
chr1:81126009-81129437:-
Coord C1 exon
chr1:81129337-81129437
Coord A exon
chr1:81127045-81127186
Coord C2 exon
chr1:81126009-81126135
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTGTCATCCTCTGACCGTAGGCT
3' ss Score
8.6
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CCCTGACTTCCCAAAAAGCAGTGCTGGAAGCCATAAAGCCACATGTGACTAAGACTGACTGAAGTCGGAGGTTATACACCTGGGAATGACCGTAATTAGAG
Seq A exon
GCTACAAGGAACACAGACCTGACTATCTGACAAGGACTGGCCGTGTGGTCAGTGGTACCGTTGGGTCGTCTCTCTCTTTCGATTTCTGCCTTTTTCAGCTCTGCATCTCCCGGAAGGAAGGGTAAAAATGAGTGCGCCCATG
Seq C2 exon
GAGGCAGTAACATTCAAGGATGTGGCTGTGATCTTCACTAAGGAGGAGTTCAGGCTGCTGGACTCCACCCAGAGGAAGCTGTACCAAGATGTGATGGTGGAGAATTTTCGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019416_MULTIEX1-7/11=6-9
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGACTTCCCAAAAAGCAGT
R:
CACTGAGAGCAGGTTCCGAAA
Band lengths:
227-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]