RnoEX0101565 @ rn6
Exon Skipping
Gene
ENSRNOG00000019416 | Zfp61
Description
zinc finger protein 61 [Source:RGD Symbol;Acc:1563843]
Coordinates
chr1:81127045-81132292:-
Coord C1 exon
chr1:81130389-81132292
Coord A exon
chr1:81129337-81129437
Coord C2 exon
chr1:81127045-81127186
Length
101 bp
Sequences
Splice sites
3' ss Seq
AATTTTTGGTTTCTCTGCAGCCC
3' ss Score
8.68
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
AGAGGTCGACGGACCCTCCCGAGCTGGAGTGACTACAGTTTTGAGCTCCCTAGTGCCTGGTACTCTGTACCAGCCGCGCTCTCCGCACTACGTCACCTCTCCAGCGCCAAAGCACATATATCCTACAGATGTATATCCCACAGACAGCCTACGATGTAAAGACATTGTTGCTCAAGGCTTTCTTAGGAACTATGAGAAATGAAAAAAGAAAAAAAACATACAAACAAAAAACAGGGAAATTCAATACGGGAGGGCGGTGCTCCTCCCCTAGCTTCATGGATGGGCCACCCACGCCTCTGCAGCCTCACTTCCGTTACCACGGAGCCGAGCGTCGTCACAGTTTCTCCACGCGGAATTCTGGGAACTCATCGGGTTCTGGTTGGCTTATTAGCCATCTGTGCCCCTGGGTTTGAGTTGTTTTAGTCAGGATGTCCCCTAGATGCTTCTGAGATCGACAGTAATTGTGTCTCCGGCGAGAAGGAAGGAGCGAGGTTTGAAAG
Seq A exon
CCCTGACTTCCCAAAAAGCAGTGCTGGAAGCCATAAAGCCACATGTGACTAAGACTGACTGAAGTCGGAGGTTATACACCTGGGAATGACCGTAATTAGAG
Seq C2 exon
GCTACAAGGAACACAGACCTGACTATCTGACAAGGACTGGCCGTGTGGTCAGTGGTACCGTTGGGTCGTCTCTCTCTTTCGATTTCTGCCTTTTTCAGCTCTGCATCTCCCGGAAGGAAGGGTAAAAATGAGTGCGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019416_MULTIEX1-6/11=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTCACTTCCGTTACCAC
R:
ACGGCCAGTCCTTGTCAGATA
Band lengths:
245-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]