HsaEX0073202 @ hg19
Exon Skipping
Gene
ENSG00000167380 | ZNF226
Description
zinc finger protein 226 [Source:HGNC Symbol;Acc:13019]
Coordinates
chr19:44669226-44674248:+
Coord C1 exon
chr19:44669226-44669295
Coord A exon
chr19:44669910-44669960
Coord C2 exon
chr19:44674188-44674248
Length
51 bp
Sequences
Splice sites
3' ss Seq
AGCCTGTTTTTCTTCCCCAGCCC
3' ss Score
8.51
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GATACTCGCAGGCACTTCCGCCCAGGAAGACGACGTAGCAGCCATCTTTTCCCTGGCTTTGGTGATTCAG
Seq A exon
CCCTGACTTCTCAAAAAGCACTGCACAGAGGAGGAGGCAGCAGAACCCCAT
Seq C2 exon
TTCAGCTTCTTAGGACTCTGCACTTCCCCAGAAGGAAGAATTAAAAATGAATATGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167380-'0-7,'0-3,2-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACTCGCAGGCACTTCCG
R:
TCATTTTTAATTCTTCCTTCTGGGGA
Band lengths:
120-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)