HsaEX1044897 @ hg38
Exon Skipping
Gene
ENSG00000159905 | ZNF221
Description
zinc finger protein 221 [Source:HGNC Symbol;Acc:HGNC:13014]
Coordinates
chr19:43951223-43965076:+
Coord C1 exon
chr19:43951223-43951400
Coord A exon
chr19:43962725-43962807
Coord C2 exon
chr19:43964950-43965076
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCTTTCCTGGCACTTTCCAGGCA
3' ss Score
7.58
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AGTCCAGACGCTCTGTGGAGTCGCGGGAGCTACGGCTGCGGGAGTTACCCTTTATTCTGTGATATTTTGAGCTGTTCTGCGTCTCGCAGGCCCTTCTGAATTTCCTGGACCTACTCTCGGAACCCTCAACGAGCTAGCGATAGATTTAGAGGAAAGGAAGCACCGTCGGAAAGCAAAG
Seq A exon
GCATGATTTCACCTTCACTTGAACTGCTTCATTCAGGACTCTGCAAATTCCCTGAAGTAGAAGGAAAAATGACCACATTCAAA
Seq C2 exon
GAGGCAGTGACATTCAAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTAGAGAACTTCAGGAACCTGCTCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159905-'0-8,'0-7,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCCCTTCTGAATTTCCT
R:
TCTCGGTACAGCTTCCTCTGG
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains