MmuEX1028567 @ mm10
Exon Skipping
Gene
ENSMUSG00000050605 | Zfp61
Description
zinc finger protein 61 [Source:MGI Symbol;Acc:MGI:99663]
Coordinates
chr7:24294955-24297738:-
Coord C1 exon
chr7:24297573-24297738
Coord A exon
chr7:24295979-24296024
Coord C2 exon
chr7:24294955-24295081
Length
46 bp
Sequences
Splice sites
3' ss Seq
TCCCATTTCTGTCTTTTCAGGTC
3' ss Score
12.37
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGGTGGAAAACGTGAGTTGCGGTGTGGGTGTGGCGATTAGAAGACCACGCTGGGGAGATGCTGCCCATCTACCATCCTGTGTATCCTGAGGACCAAACTCGGGCTTGGTGGTAAAAGCTTTTATCCACCAAATCCTCCCTCGTGGACTTCGAGATTGCCTAATTAG
Seq A exon
GTCTGCACCTCCTGGAAGGAAGGGTAAAAAAGTGAGCGGGCCCATG
Seq C2 exon
GAGGCAGTAACATTCAAGGATGTGGCTGTGGTCTTCACTAAGGAGGAATTCAGGCTGCTGGACTCCGCCCAGAGGACGCTGTACCAAGATGTGATGGTTGAGAATTTTCGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050605_MULTIEX1-2/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACTCGGGCTTGGTGGTAA
R:
GTCCAGCAGCCTGAATTCCTC
Band lengths:
136-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types