MmuINT1035658 @ mm10
Intron Retention
Gene
ENSMUSG00000050605 | Zfp61
Description
zinc finger protein 61 [Source:MGI Symbol;Acc:MGI:99663]
Coordinates
chr7:24294955-24296024:-
Coord C1 exon
chr7:24295979-24296024
Coord A exon
chr7:24295082-24295978
Coord C2 exon
chr7:24294955-24295081
Length
897 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GTCATCTGTGCTTGTTGTAGGAG
3' ss Score
8.29
Exon sequences
Seq C1 exon
GTCTGCACCTCCTGGAAGGAAGGGTAAAAAAGTGAGCGGGCCCATG
Seq A exon
GTAAGTAGAGCTCGCCCTATTTGTTGTCAGAATGTAACGGGGTCCTCTCAAGCTAGAGGATTGTTCTCCTGTAAGGAGACTCAACGCATTCGAGAGCTGACAAGGTGGCTCAGGGGTTAAGGTGCATGCCTCCAGGCCTGATGACCTAAGTCTGATCCCCAAGATCTACATGGTGGACGAAGAGAACCAACCTCCACAAGTTATCCGCCGTCTTTTACACAAGCACTGTCACACACACATGTGCACACGAGAGCGCACACAGGCAATGAGTAAGTGTGATTTTAAAAATAGGTTGTATGAAAGCACTTGATGTCTTGAGGATATGCCAGGTGCTTGTTTGTCCCTGTAAGTTTAACTGTCCTCCACCTCTTCAGGGCCACTGTGCCTCTAGAGACATTGGTATTGACTTATCTTTTAGGGAGACACAATCAGACATCTGTTTACCCCAAGTAGGGGATCCACAACAGACTCAAGTAACAGTGCCACCCGAAGCCACATTGGTGAATTGGTGGGTCTATTGGGGTTACTCCCAGGAGCAGGATGACTGCAAGGCAGCTGCGTCATGGAAGGGTTTCCCAGAACTTTATGTACGCCTTGCAGACATCTCAATAGGTAGGAGAGGCTCTTCTAGGAAACTCTGTTGACCTGAGTCCCCTAAGCAGTTCTTACTGCTCATATAACTCTATGGCCAGAGGAACCTTGGGCATCTGGTCAGTTTCAGGGAGTTCCTGGGACTAATGAGTTGTATAATCGCAGAATCTCAAGGAGCCTCCTTTTAGAATTTCTTGAGTCTTTACAAGCTTACCCCCCATCTCCCTCAAGAGAAACTATTTTAACTAGGACGATGTTACTAACAGCAGTTGCTTGTAAGATTGAGGTCATCTGTGCTTGTTGTAG
Seq C2 exon
GAGGCAGTAACATTCAAGGATGTGGCTGTGGTCTTCACTAAGGAGGAATTCAGGCTGCTGGACTCCGCCCAGAGGACGCTGTACCAAGATGTGATGGTTGAGAATTTTCGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050605:ENSMUST00000077780:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types