MmuEX1028568 @ mm10
Exon Skipping
Gene
ENSMUSG00000050605 | Zfp61
Description
zinc finger protein 61 [Source:MGI Symbol;Acc:MGI:99663]
Coordinates
chr7:24294955-24297738:-
Coord C1 exon
chr7:24297573-24297738
Coord A exon
chr7:24295710-24295948
Coord C2 exon
chr7:24294955-24295081
Length
239 bp
Sequences
Splice sites
3' ss Seq
CTCGCCCTATTTGTTGTCAGAAT
3' ss Score
5.84
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GGGTGGAAAACGTGAGTTGCGGTGTGGGTGTGGCGATTAGAAGACCACGCTGGGGAGATGCTGCCCATCTACCATCCTGTGTATCCTGAGGACCAAACTCGGGCTTGGTGGTAAAAGCTTTTATCCACCAAATCCTCCCTCGTGGACTTCGAGATTGCCTAATTAG
Seq A exon
AATGTAACGGGGTCCTCTCAAGCTAGAGGATTGTTCTCCTGTAAGGAGACTCAACGCATTCGAGAGCTGACAAGGTGGCTCAGGGGTTAAGGTGCATGCCTCCAGGCCTGATGACCTAAGTCTGATCCCCAAGATCTACATGGTGGACGAAGAGAACCAACCTCCACAAGTTATCCGCCGTCTTTTACACAAGCACTGTCACACACACATGTGCACACGAGAGCGCACACAGGCAATGA
Seq C2 exon
GAGGCAGTAACATTCAAGGATGTGGCTGTGGTCTTCACTAAGGAGGAATTCAGGCTGCTGGACTCCGCCCAGAGGACGCTGTACCAAGATGTGATGGTTGAGAATTTTCGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050605_MULTIEX1-3/3=1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSMUST00000165241fB19953
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGAGTTGCGGTGTGG
R:
CCACTGAGAGCAGGTTCCGAA
Band lengths:
284-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types