BtaINT0165543 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004262 | ZNF454
Description
zinc finger protein 454 [Source:HGNC Symbol;Acc:HGNC:21200]
Coordinates
chr7:2355396-2361865:-
Coord C1 exon
chr7:2361855-2361865
Coord A exon
chr7:2355445-2361854
Coord C2 exon
chr7:2355396-2355444
Length
6410 bp
Sequences
Splice sites
5' ss Seq
GATGCTGCG
5' ss Score
-28.13
3' ss Seq
CCAGTGAGAACTGACTTGAGGAT
3' ss Score
-5.42
Exon sequences
Seq C1 exon
CTTCTGCTGAT
Seq A exon
GCTGCGCTGGGCTGTAAGTACCACACAAGCATAGCCAGATTTATTGCATGTTTTGTTTTGCTCATACCCAGCAAAGTGCTTGGCACCTAGTAAGGGCCAAAGACTTGTTGCCTAGGGATACAGAGACCACGCTAGTTTAGTGGCTGTTACTTGTGTTGAGGAACCCATTGGATCTGGCAGCTCAAGAGCAGGAGCAGGGGTGCCTCTCCCCAAATCCGGGAATACTCTAGAGAGCTATTGCATTATCCAAGACATTACAACATTTTCACTTTCTGCCAGCATTTTGCCAACTGCGAAATATTTTTAAAAACCTTTTGTTATTGATTTTTCATAGAAGCCCAATGAAGTAGGGAGGACTTTGTATCCTACAGTAAATAACTTTACCTAGAATGTCTAGGATCTAATCTGTTACAGAATTTAAATGTCTGAACGCCAAAACTCAGTTATCAAAATCTTTTAACTTGCCTCAGTAGTGTTCTGAGTTTGTATGTTTATTACAGCCAAACTAAGGCATTTTTAGTATTTCACTCTGTATTATACAAGCAGTGTTATAACAAAAAAAGATGGGGTGGGAATTAAATGAATCCACTGTCCCAGTACTCTGGCATAATAACATCATTTATTCTTTTTATTCTTGCATTATTCATCATTGACACAAATTCTTTATTGTACTTCTGTGGGGCAATTGTGAGATTGAAGAGGACTTTTATGCCTAGAAGGGATTTTAGAGTCAGGTGTGAGTAATGACATGAAAATCCAGGGGATCATAATTCAGCCCTTCCCAGGTGCATTTCACAAACCTCTGCTCCAGCACCTCTTGTTTCTGAATGTCCTCAACACCGCAAACCATGAGCTGATTCATGAAGGATGTTTAGTGGTCAGCCAGTCAGACACGGAAAGAAATCTTGTTTTATATCTCCCAATATGGTTTTGGGGTTTGTTTGTTTGTTTTTTGCACCATGAGGCTTGTGGGATTTTAGTTCCCTGACCAGGGATCAAACCCAGGCTCCCGGCAGTGGAAGGGCAGAGACCAAACCACTGGACCACCAGAGAATTACCCCAATAAAGTTCCTTCAATTTCTTGTTAAAGTTATATTTTTGTTTTTTAATATAACCTCTTTCCTTTTGTTTTTCAACTGCAAATTGCTGCTATAAGAAAGTGGTAGTCATTTCCAAATATTTATTCCCCTCATGTCACTCTCCAATTCTTATTCTTCTTATTCAATGAATCATTTTTAGTTTTAGGTTTTCTTCTTTCTGTTTCACTTCTTAATTACTGGCTAGAACTTAAAAGACCATATAGAACAATGATAATAGGTTTATCTATGACTTTTCTGTTGTTGCATCAGTCACTCTTGGTTTAGACAGATACTTAATTTTCTTCATAGTAAGAAAAAGTCCTTCCGGTAGCTTTCCTTTAAAATTTTTCTCTTCCCTGGGCTTTGAGCTAGTATACACAGGGAGCTGACTTTTGAGCCCTTGTGGATCAGCACCTTGCTGGGTGATCTCTGGAGATGTGTTAGCTGCCCCATTTCAACCTTAACAACCTGTAAGCCAAAAATGATTAACTCTACTTAAAGAAAAACAAGCTTCTGTGTGGTTAACTAATTTCAACATATGCAAGGCAAGATGTGGGTTAAACCAGCATGCCGCTCAAACTGTGTCATTTTCCACCCTTCTCCAAAATAGCTTTACTTGTACAGAAATTGTTCGCTTAGTAAACCTGAAGAAAACTGCCTCATCCCTTAATTTAAGTAGTTTGCTAGTAACTTATTACATTTTTTCCTTATTTATTAATCTGTTTATATCTGTTGTTTCTTTTTGTTATATCAATTGCACATTTTGCCCTTTAGCTTTAAATTACCTTTTTTTGAGCTATAAAATGTATTCATTTACAACTGTGCATGGTATTCATCTATAATTTTAACATTTTATATTATATCCTCTTTCTCATTTTTATCTGCATTTTTTTCTCTAAAATTTGTTGAGACATTTTGTAGAGAATTAGCTCTTATTTCTCTTTCATTCTAATATTTTATTTTAACACTTAGCATTATCATTTCCTTTTTTTTTTTAACTTCAGACAGATGTATTTTGATACTGTAATCCTGTCTACAGAACAGAACATGTACTATTTTGAACAGTCTGAAAAATAGGTAAACAGCCCCCACACTGCATGAAAGTAAAAGTTGCTCAGTCGTGTCCAACTCTTTGTGACCCTATAGTCCATGGAATTCTCCAGGCCAGAACACTGGAGTGGGTAGCCTTACCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCAAGCCCAGGTCTCCCACATTGTGGGCAGATTCTTTACCAGCTGAGCCACAAGGAAAGCCCAAAAATACTGGTGTATTTTGAACAGTCTGAAGAATAGGCAAACAGCCCCCATACTCCATGGTCCAGCTTAAGAAACAGAACACAGCTGCACCTGTGAAGTTTGATATATCCCTCCTCATCGAATCTTCCTCCTTTCATACCAGAGAGCCCCTGGCTTGAATTTTACATTAGGTCCAGTGCTGGCTCTTCATGCCCTTCACCATATTTATCCATCCATGCATGCATGCCAAGTCACTTCAGTTGTGTCCAGCTCTTTGTGAAACCATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGTATTCTCCAGGCAAGGATACTGGAGTGGGTTGCCACTTCATACTCCAGGGGATGAAACCCGACCCAGGGATCGAACCTGCATCTCTTGTGTTTCCTGCGTTGGCAGGAGGATTCTTTACCACTGGCGCCACCCGGGAAGCCTACATTTATCCATAGCTCTGAGCAATGTTGTTTAGCTTTACATGCTTTAAAGCTTGATGTATATGTATTGTACTATAGATACCTTTCCACAGCTTGATTTTTTTTTTTTTTAAACTTTTTGGCCAAGCCATATCGTATGGGGATCTTAGTTCTCCCACCAGGGCTCAAACCCGAGCCACCTGCATTGGAAGCTCAAAGTCTTAACCACTGGAAGTCTCACAGCTTGCATTTTAAAAATCCTTGTTGAGATGTGTAGCTTTAGTCATTTTTAACTGCACTTGATACTTCTTCAATGGCTATACCTTAATCTGTTTTGTTGACAGGCTGTAGGTTGTTTCCAGACTTTTTGCTGCTTTTTTAATACTGCTGACTGGATATTCTTGTACATGCTTCCTTAAATATTTGGGCCTTGTTTGGGAGTTTCTTTAGGTGTATTCATAGGTGTAGAAATACTGGGTTTAAGAGTATATACTTTTTCAGCTGTACTAGATGGTTCCAGATTGCTGATTAAATTAATTGGTCCTAATTATACTAATAGTTGATGCAAGTTCCTATTACTTGCCAGAGTAACATGAACTTGCCAAACTTCCTGAGAAATGTTATCTCATTGTGATTTTAATTGGCACTTCCTTGTTTCCTAGTGGAATTGAACATCTTTTCATTTGTTGATTATTTGTGTTCTGTGAAATATTCATATTCTTCCTCCACTTTTCTTTTACAGTTTATCTTATTTGCTTGTAGGAGATATTCAGGAATCTAATACTTTATCAGTTAATATGCGTGCCAGTCTATAGCTTATCTTTTCTCTTTCTTTACTGGCTGAAGTTCTTAATCAGTCTTAGTCTTAATGATCTTTATTTTACTGTTTTCTGTGTCCTTTTAAAATAATCCTTTCTATCCTTATATCCATGAGAGAAAGACTTGATCATGTTTGCTCTTGTATTTCAGCTCACCAGGTCCCATTATGTATTTGTTGAATCAAAGTGTAATTGTTTTATAATAATATTTACTTTTGTCTTTTTTTCCTTGTATGCTGCTGCTGCTGCTAAGTCGCTTCAGTTGTGTCCGACTCTGTGCAACCCCATAGACAGGAGCCCACCAGGCTCCTCTGTCCCTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTTCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTTGTGTCCGACTCTTAGTGACCCCATGGACCGCAGCCTACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTTCCTTCTCCATTTTTTCCCTGTATAAATCTTATCAAAGTTTCCCTTTTTTAATAAATTTAATAAATACATTTTTAACTTTATTGATACTTTCTATTTTATCTTTATTTCATTAAATAGTGCTCTTCATTAGTTCTTTCCTTTGACTTTTTTGGAGTGTGTTCTTTTTCTTTATTTTCAGTATTAAATTTCATCACAATAATACATTTAGTTTAATGAAATTACAGTATGCGTTATGAAAACTGATGGCCTCTTGTCCCTGTTTATCCCCATTCTCTCCTCTTTAGAAATAACCATTTTCTCTCCTTTCAGCAGATTATTTGGTATATTTGCTTCCGTGTCTTCAAGGAATGTGTTTATATTGCTACCTATTGACCTCAGTTTTAGGTATTATTTACTGAATTCCTCCTCTAGAAAGTGAGGACTAAACTCACTTCCCCAACTGTTCATCTTATTACCTTTTCCATTCCCTGTCTTCCCAGTATAGTATATTTTTGGTCAGAGAAATAGTCAGTGTTTACATTCTGAAGCGCTATTCACAGCTGACCCATGTAGTAATTGTGACTTTTGCCTTTGCTTTCCTAAGCAGTCTTTCATGGGGTTCATTTAGTTTATTAATCTCAGACCTTGCCTCATTGTCTGCATCTCTTCTCAAGAAGTTTAGATCGGCAGTCATCCTAACAATTTCATTTTCCTGGAAAATTTCTTTTGGAGCAATCTGACCTGCTCTGTTCTCGCAGGGCCTTAGCTATCATCCTCCTACAAATCCCATCTTTCCTGGCCCACATGTCCCACGTCATCCTTTTTCTTGGCTTCTTTCTTCCTTTTGTGGCACATATCTTCCAGTACCTTCCAAAGAAAGGATGCATGGGAATAAGTTTTTGCTAACCTAGCATCTGTCAATGTCTTTTTTTTCTCCCATACCAGTGGTAGAATTCAGCAGTGGATGTCTTTTTTTCTTCAGAATTCTGAAGACATTGCTCTAGTATTTTGTAGTCCTCAGTCTGATATTGAGAAATCCAAAATCATTCAGGTTCTTCATCGTTTGTGATCCATTTTTCCTCTCTGAAAGCTTGCAGGATCTCCTCATTTACTCCAGTGTTTCTCAGTGATGAACCCTGTTATGGTCCTATGCTTGGATCCATTAAGCACTGGTGAGCCTTCCACCTGAATTTCTGCCTTGTGGATCTAGGACGTTTTCTTCTAGTATTTTTTAATTTCCACCTTAAGCTTTCTCTATTTGCTCTTGATGGTATGCCTGATACTTCCTGGACTGGTCTTGTAATTTTAACTTTGTATTAAAATTTCCATCTTTATGAATTTTTTTGTTCTACTTTTTGACAGGTTTCTTCCGTTTTGACAGGTGTCTTTTTGACAGGTGCCTTCCATTTCATCTGTCGCGATTTTTAAAATGTCTTAAGCAGTCTTTCCCTGTCATTTGTCCATTGCCTAAAAATAGTTGGTTCATTTTCTCCCCTGGTTTTCCAGTTGTTTATGGTGGGAATTCTCTGTTGAGGTTTCAAATTCTGCCATCGTTTTTAATTTCCAAGAACTCTTGTGTTATTTGTAAGCTCTTATTCACATTTTACAATTAAAATATTTTACCTCTAAATATAATGATTTTCAAAAACACTTTCATCTCCCTTTATAGGCACTGTATTCTCAGATTTTCTCTTTGATTGCTTAAAAACCTCTTTTTAAGAGGTTTTCCTCAGTTGGGAGAGAGAAGCTCTCTTTTTTCTCTAAGTTGGAGAAGACCTGGGGGCAATAAAGTCTTCCTAAACTGACCTTGGGCTTCCCTCGTGACTCAGACAGTAAAGAATCTGCCTTCAATGCAGGAGACCTGGGTTCGATCCCCAGGTCGGGAAGATCTCCTGAAGAAGGGAATGGCAACCTACTCCAGTATTCTTTCCTAGAGAATTCCATGGACAGAGAAGCCTGATGGGCTATAGTCCACAGGGCTGCAAAGAGCTGGACTCGACTGAAGCACCTAACACACACAAACTGACCAGTACTCCTTATTTTACCCACTGCCACTCTCAGATGTACCTGATGGCGCCAGGTCTTGAAACTTCTGATGATTTGGAGGAAACTGGGTCAGTTTCTGGGCCCTCTCTGGGTGTGACCTCTTGACTACATTGTATAGGGTTTGGATCATACTACTTGCATGCTTTGCTTGATACCCTCAAGTTACATATTAATTGTTTAAAACCATACTTTGTTTTTTTAATTTGGGTCAGTGCAGCTATGGGTATTGCTCCTAATCCAGCCCCCATGAAGTGACCTGGGCCCCAGTGAGAACTGACTTGAG
Seq C2 exon
GATCCAGTCTTTCCCCATATCAGTTCATCTTCAGTGTGCCAGAACCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004262:ENSBTAT00000016859:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]