BtaEX0041340 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000004262 | ZNF454

Description

zinc finger protein 454 [Source:HGNC Symbol;Acc:HGNC:21200]

Coordinates

chr7:2347258-2362952:-

Coord C1 exon

chr7:2362826-2362952

Coord A exon

chr7:2362335-2362424

Coord C2 exon

chr7:2347258-2348591

Length

90 bp

Sequences

Splice sites

3' ss Seq

TTTTTTTCCCTCAAAAACAGGAC

3' ss Score

9.02

5' ss Seq

TTGGTAAGC

5' ss Score

8.72

Exon sequences

Seq C1 exon

GAATCAGTGACCTTCAAGGATGTGGCCGTGCTTTTCACCCAGGATGAGTGGGCGCAGCTGAGTCCGGCCCAGAGGGCCCTGTACAGGGATGTCATGCTCGAGAACTACAGCAACCTGGTGTCCCTGG

Seq A exon

GACTCTTAGGACCCAAACCAGATATGTTTTCCCAGTTGGGAAAAGGGGAAGAGTGGATGCCAGAGGACTCCTTGGGAGGCTTCTGTCTTG

Seq C2 exon

ACTGGGTGATTACACCTATGAATAAGAAATCTATTCTCAAGGCAGATATTCCTGAAGGAGAATTGGGTCAGTGGATGATAAAGGAAAGATTCACTAGAGATAGTTGCTGGAAATATGATGACCTGTTGGAATGGCAGCATGGAGGCCAGGAGATAAACTTGGAGCAAGTGGTGCTTGCTCATGAGAAAACTTCGTCTGTGGTTGGCGACCAGAAATGTGATGAATCTGGGAAACCCGGCACCATGAACTCATCTTTTGTTCAAAGTCAGGGATTTCAATCTAGCAAAAAAGCCTTTGAGTGTAGTGAGTGTGGAAAAGTCTTCACTAAGAGTTCAACCCTCAATAAACATCAGAAGATTCATAGTGAAAAACTTAATGCAAATCAGAAAATTGTTATTAAAGAGAAGCGATATGAATGTAGAGAATGTGGGAAGGCCTTTCACCAGAGCACACACCTCATCCATCACCAAAGAATTCACACTGGTGAGAAGCCATATGAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000004262_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.030 C2=0.106

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0009621=zf-C2H2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)

Main Inclusion Isoform:

ENSBTAP00000016859