RnoEX0004315 @ rn6
Exon Skipping
Gene
ENSRNOG00000022971 | AC115666.1
Description
NA
Coordinates
chr10:36361312-36372436:-
Coord C1 exon
chr10:36372064-36372436
Coord A exon
chr10:36371559-36371651
Coord C2 exon
chr10:36361312-36365090
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCTCCTTCACAAGCAG
3' ss Score
4.42
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GAGTGGGAGATGTGGACATGGTGAACAAGTGCGCAGTCCCACTACCTCTCTCCAGTTGTGCCAAAGTTGGAGACAAAGTTTGTCAGCAGCACAAAGCTCAGCCACTGGGAGATACTGCAGAAACGCCTAGCCCTGTCCTGAACACCAGCGTCCTGCAGACTGGCGACCCAGGAGAGGTGTGGAGGCAGCCAGTGTGAACTTGTCTGTGGTATCGCCTGGTTGATAAGGAAGGCTTCTCTGTTACAGGACTTGGTGACCTTCAAGGAGGTGGCCGTGCTCTTCACCCAGGAGGAGTGGGGGTGGCTGAGCTCTGCCCAGAGGGACTTGTATCAGGATGTGATGCTAGAGAACTACAGTAACCTGGTCTCGCTGG
Seq A exon
CAGGTCTCTTGGAATCCCTACCAGACATGTTCTTTCCCCTGGAAGAAGTGGAAGAACGTGTGTCAGAGGAAGCTCCCAAGGGCTTTGTTCTGG
Seq C2 exon
GAGGGATGACTATGGCCGTGAGTAAGAAATTCCTTCAGGCAGATATCCCTGAGAAAGGATCAGATCAATGGATTACGGAGCAGAGAGCCACCAGAGAGACTCACTGGGTGTGTGCTGAGGAAGGTCAGGAGGTCAAGCCGAAGCAAGCAGTCCTCACCCATCAGGACACTCCATCAAAGCTGAGTGAGCAGAAAGTTGGGGAGTCTGACAAGGGCTGCACAGCGAGCTCCTCACCCATTCGAAGTCAGAGATCTCAAGCAAGCCAAAGAGCTTTCGAATGCAACAGATGCGGAAAAGTCTTTTCTAAGGGTTCCATCCTTAAGAAACATCAGAAACTTCATATTGAAAAACTCAACCCAAGTCAGAAAACACTGGTGAAAGAAAAACGGTATGAATGCAGAGAATGTGGGAAAACCTTCCACCAGAGTACACACCTCATCCATCACCAAAGAGTTCACACTGGTGAGAAACCGTATGAGTGTAAGGACTGCGGCAAGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022971-'2-6,'2-3,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.219 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGGTTGATAAGGAAGGC
R:
TCACGGCCATAGTCATCCCTC
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]