MmuEX0053364 @ mm9
Exon Skipping
Gene
ENSMUSG00000048728 | Zfp454
Description
zinc finger protein 454 [Source:MGI Symbol;Acc:MGI:2679253]
Coordinates
chr11:50691545-50700000:-
Coord C1 exon
chr11:50699871-50700000
Coord A exon
chr11:50696686-50696778
Coord C2 exon
chr11:50691545-50691607
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTGTTCCTTCACTAGCAG
3' ss Score
6.83
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GAGTGCAGATGCTTCTAGCCAGAGAACCCCAGCAATTGTAAAGCTCCTCCCCTGCCTCCTTCCTACTCAATGCTCCTCAGCTCACCAGAGAAAAGGAATGGCTGTCAGCCAGCTCCCGGCCCTGGTCCAG
Seq A exon
CAGGTCTCTTAGGATCCCAACCAGATATGTTCTTTCCCCTGGAGGAAGTGGAAGAATGTGTGTCAGAGGAGGCTCCTGAGGGCTTTGTTCTGG
Seq C2 exon
ATGCCGCAGATGAACCTCACTTGGGTCCTCGATCTGCGTGTGAAGCTCAGGTTCCGGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048728_MULTIEX1-3/4=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.094 C2=0.379
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAGCCAGAGAACCCCAGC
R:
CCTGAGCTTCACACGCAGATC
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: